ZN701.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN701.H12RSNP.0.P.D
Gene (human)	ZNF701 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	19
Consensus	ddGAGMAbhhWRGGGGGRM
GC content	59.5%
Information content (bits; total / per base)	17.135 / 0.902
Data sources	ChIP-Seq
Aligned words	220

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (10)	0.859	0.944	0.855	0.936	0.863	0.946	5.312	6.694	59.721	103.328

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF525-like {2.3.3.27} (TFClass)
TFClass ID	TFClass: 2.3.3.27.2
HGNC	HGNC:25597
MGI
EntrezGene (human)	GeneID:55762 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN701_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9NV72 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN701.H12RSNP.0.P.D.pcm
PWM	ZN701.H12RSNP.0.P.D.pwm
PFM	ZN701.H12RSNP.0.P.D.pfm
Alignment	ZN701.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN701.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN701.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN701.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN701.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN701.H12RSNP.0.P.D_homer_format_0.001.txt ZN701.H12RSNP.0.P.D_homer_format_0.0005.txt ZN701.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	74.0	23.0	95.0	28.0
02	63.0	20.0	78.0	59.0
03	15.0	2.0	203.0	0.0
04	202.0	0.0	14.0	4.0
05	7.0	5.0	203.0	5.0
06	65.0	131.0	17.0	7.0
07	203.0	2.0	14.0	1.0
08	9.0	121.0	46.0	44.0
09	32.0	123.0	25.0	40.0
10	105.0	39.0	22.0	54.0
11	136.0	16.0	32.0	36.0
12	122.0	18.0	65.0	15.0
13	25.0	2.0	188.0	5.0
14	2.0	2.0	216.0	0.0
15	1.0	2.0	213.0	4.0
16	35.0	2.0	174.0	9.0
17	17.0	3.0	187.0	13.0
18	66.0	23.0	118.0	13.0
19	156.0	25.0	18.0	21.0

PFM

	A	C	G	T
01	0.336	0.105	0.432	0.127
02	0.286	0.091	0.355	0.268
03	0.068	0.009	0.923	0.0
04	0.918	0.0	0.064	0.018
05	0.032	0.023	0.923	0.023
06	0.295	0.595	0.077	0.032
07	0.923	0.009	0.064	0.005
08	0.041	0.55	0.209	0.2
09	0.145	0.559	0.114	0.182
10	0.477	0.177	0.1	0.245
11	0.618	0.073	0.145	0.164
12	0.555	0.082	0.295	0.068
13	0.114	0.009	0.855	0.023
14	0.009	0.009	0.982	0.0
15	0.005	0.009	0.968	0.018
16	0.159	0.009	0.791	0.041
17	0.077	0.014	0.85	0.059
18	0.3	0.105	0.536	0.059
19	0.709	0.114	0.082	0.095

PWM

	A	C	G	T
01	0.291	-0.839	0.536	-0.652
02	0.133	-0.971	0.342	0.069
03	-1.237	-2.823	1.288	-3.733
04	1.283	-3.733	-1.301	-2.355
05	-1.909	-2.183	1.288	-2.183
06	0.163	0.854	-1.122	-1.909
07	1.288	-2.823	-1.301	-3.178
08	-1.695	0.775	-0.174	-0.217
09	-0.525	0.792	-0.76	-0.31
10	0.635	-0.334	-0.881	-0.018
11	0.891	-1.178	-0.525	-0.411
12	0.783	-1.069	0.163	-1.237
13	-0.76	-2.823	1.212	-2.183
14	-2.823	-2.823	1.35	-3.733
15	-3.178	-2.823	1.336	-2.355
16	-0.438	-2.823	1.135	-1.695
17	-1.122	-2.562	1.207	-1.368
18	0.178	-0.839	0.75	-1.368
19	1.027	-0.76	-1.069	-0.925

Standard thresholds

P-value	Threshold
0.001	2.66431
0.0005	3.81466
0.0001	6.24641