ZN684.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN684.H12INVIVO.0.P.C
Gene (human)	ZNF684 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	16
Consensus	bRSWGTCCWCCCCWTb
GC content	58.25%
Information content (bits; total / per base)	18.56 / 1.16
Data sources	ChIP-Seq
Aligned words	450

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.955	0.967	0.951	0.962	0.957	0.971	8.212	8.342	219.743	244.167

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Methyl HT-SELEX, 1 experiments	median	0.62	0.645	0.544	0.568	0.514	0.535
Methyl HT-SELEX, 1 experiments	best	0.62	0.645	0.544	0.568	0.514	0.535

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.68
HGNC	HGNC:28418
MGI
EntrezGene (human)	GeneID:127396 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN684_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q5T5D7 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	1

PCM	ZN684.H12INVIVO.0.P.C.pcm
PWM	ZN684.H12INVIVO.0.P.C.pwm
PFM	ZN684.H12INVIVO.0.P.C.pfm
Alignment	ZN684.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN684.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN684.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN684.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN684.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN684.H12INVIVO.0.P.C_homer_format_0.001.txt ZN684.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN684.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	52.0	152.0	83.0	163.0
02	344.0	39.0	40.0	27.0
03	16.0	360.0	42.0	32.0
04	318.0	34.0	35.0	63.0
05	8.0	34.0	397.0	11.0
06	6.0	9.0	11.0	424.0
07	6.0	432.0	6.0	6.0
08	5.0	428.0	2.0	15.0
09	323.0	4.0	35.0	88.0
10	2.0	411.0	28.0	9.0
11	13.0	421.0	4.0	12.0
12	0.0	422.0	2.0	26.0
13	2.0	439.0	1.0	8.0
14	40.0	34.0	23.0	353.0
15	20.0	44.0	11.0	375.0
16	37.0	59.0	152.0	202.0

PFM

	A	C	G	T
01	0.116	0.338	0.184	0.362
02	0.764	0.087	0.089	0.06
03	0.036	0.8	0.093	0.071
04	0.707	0.076	0.078	0.14
05	0.018	0.076	0.882	0.024
06	0.013	0.02	0.024	0.942
07	0.013	0.96	0.013	0.013
08	0.011	0.951	0.004	0.033
09	0.718	0.009	0.078	0.196
10	0.004	0.913	0.062	0.02
11	0.029	0.936	0.009	0.027
12	0.0	0.938	0.004	0.058
13	0.004	0.976	0.002	0.018
14	0.089	0.076	0.051	0.784
15	0.044	0.098	0.024	0.833
16	0.082	0.131	0.338	0.449

PWM

	A	C	G	T
01	-0.756	0.297	-0.299	0.367
02	1.109	-1.034	-1.01	-1.386
03	-1.873	1.154	-0.963	-1.224
04	1.03	-1.166	-1.138	-0.569
05	-2.482	-1.166	1.251	-2.209
06	-2.718	-2.382	-2.209	1.317
07	-2.718	1.336	-2.718	-2.718
08	-2.86	1.326	-3.476	-1.931
09	1.046	-3.027	-1.138	-0.242
10	-3.476	1.286	-1.351	-2.382
11	-2.06	1.31	-3.027	-2.132
12	-4.313	1.312	-3.476	-1.421
13	-3.476	1.352	-3.809	-2.482
14	-1.01	-1.166	-1.537	1.134
15	-1.667	-0.918	-2.209	1.195
16	-1.085	-0.633	0.297	0.579

Standard thresholds

P-value	Threshold
0.001	1.77081
0.0005	3.01436
0.0001	5.65401