| Motif | ZN682.H12INVITRO.1.P.D |
| Gene (human) | ZNF682 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | ZN682.H12INVITRO.1.P.D |
| Gene (human) | ZNF682 (GeneCards) |
| Gene synonyms (human) | |
| Gene (mouse) | |
| Gene synonyms (mouse) | |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 11 |
| Consensus | RRvbMAGCCCh |
| GC content | 70.53% |
| Information content (bits; total / per base) | 11.822 / 1.075 |
| Data sources | ChIP-Seq |
| Aligned words | 401 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Human | 2 (6) | 0.925 | 0.928 | 0.859 | 0.862 | 0.893 | 0.894 | 3.546 | 3.557 | 540.626 | 590.602 |
| TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
| TF class | C2H2 zinc finger factors {2.3} (TFClass) |
| TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
| TF subfamily | Unclassified {2.3.3.0} (TFClass) |
| TFClass ID | TFClass: 2.3.3.0.109 |
| HGNC | HGNC:28857 |
| MGI | |
| EntrezGene (human) | GeneID:91120 (SSTAR profile) |
| EntrezGene (mouse) | |
| UniProt ID (human) | ZN682_HUMAN |
| UniProt ID (mouse) | |
| UniProt AC (human) | O95780 (TFClass) |
| UniProt AC (mouse) | |
| GRECO-DB-TF | yes |
| ChIP-Seq | 2 human, 0 mouse |
| HT-SELEX | 0 |
| Methyl-HT-SELEX | 0 |
| PCM | ZN682.H12INVITRO.1.P.D.pcm |
| PWM | ZN682.H12INVITRO.1.P.D.pwm |
| PFM | ZN682.H12INVITRO.1.P.D.pfm |
| Alignment | ZN682.H12INVITRO.1.P.D.words.tsv |
| Threshold to P-value map | ZN682.H12INVITRO.1.P.D.thr |
| Motif in other formats | |
| JASPAR format | ZN682.H12INVITRO.1.P.D_jaspar_format.txt |
| MEME format | ZN682.H12INVITRO.1.P.D_meme_format.meme |
| Transfac format | ZN682.H12INVITRO.1.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 59.0 | 37.0 | 271.0 | 34.0 |
| 02 | 95.0 | 31.0 | 246.0 | 29.0 |
| 03 | 55.0 | 238.0 | 56.0 | 52.0 |
| 04 | 56.0 | 162.0 | 74.0 | 109.0 |
| 05 | 226.0 | 156.0 | 16.0 | 3.0 |
| 06 | 395.0 | 3.0 | 1.0 | 2.0 |
| 07 | 3.0 | 6.0 | 390.0 | 2.0 |
| 08 | 1.0 | 390.0 | 4.0 | 6.0 |
| 09 | 1.0 | 395.0 | 0.0 | 5.0 |
| 10 | 2.0 | 397.0 | 0.0 | 2.0 |
| 11 | 81.0 | 199.0 | 39.0 | 82.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.147 | 0.092 | 0.676 | 0.085 |
| 02 | 0.237 | 0.077 | 0.613 | 0.072 |
| 03 | 0.137 | 0.594 | 0.14 | 0.13 |
| 04 | 0.14 | 0.404 | 0.185 | 0.272 |
| 05 | 0.564 | 0.389 | 0.04 | 0.007 |
| 06 | 0.985 | 0.007 | 0.002 | 0.005 |
| 07 | 0.007 | 0.015 | 0.973 | 0.005 |
| 08 | 0.002 | 0.973 | 0.01 | 0.015 |
| 09 | 0.002 | 0.985 | 0.0 | 0.012 |
| 10 | 0.005 | 0.99 | 0.0 | 0.005 |
| 11 | 0.202 | 0.496 | 0.097 | 0.204 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.52 | -0.972 | 0.985 | -1.053 |
| 02 | -0.053 | -1.141 | 0.889 | -1.205 |
| 03 | -0.588 | 0.856 | -0.571 | -0.643 |
| 04 | -0.571 | 0.474 | -0.298 | 0.082 |
| 05 | 0.805 | 0.437 | -1.76 | -3.119 |
| 06 | 1.36 | -3.119 | -3.707 | -3.37 |
| 07 | -3.119 | -2.608 | 1.347 | -3.37 |
| 08 | -3.707 | 1.347 | -2.918 | -2.608 |
| 09 | -3.707 | 1.36 | -4.218 | -2.751 |
| 10 | -3.37 | 1.365 | -4.218 | -3.37 |
| 11 | -0.21 | 0.678 | -0.921 | -0.198 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.12038 |
| 0.0005 | 5.1816 |
| 0.0001 | 7.478395 |