ZN682.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN682.H12INVITRO.0.P.D
Gene (human)	ZNF682 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	RSMRSCYYYShvGRMYMAGCCCY
GC content	65.05%
Information content (bits; total / per base)	19.926 / 0.866
Data sources	ChIP-Seq
Aligned words	967

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (6)	0.939	0.943	0.911	0.919	0.908	0.915	9.578	9.76	534.468	597.77

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.109
HGNC	HGNC:28857
MGI
EntrezGene (human)	GeneID:91120 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN682_HUMAN
UniProt ID (mouse)
UniProt AC (human)	O95780 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN682.H12INVITRO.0.P.D.pcm
PWM	ZN682.H12INVITRO.0.P.D.pwm
PFM	ZN682.H12INVITRO.0.P.D.pfm
Alignment	ZN682.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN682.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN682.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN682.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN682.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN682.H12INVITRO.0.P.D_homer_format_0.001.txt ZN682.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN682.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	578.0	117.0	204.0	68.0
02	138.0	158.0	623.0	48.0
03	587.0	195.0	118.0	67.0
04	625.0	109.0	148.0	85.0
05	70.0	765.0	99.0	33.0
06	56.0	808.0	59.0	44.0
07	55.0	748.0	63.0	101.0
08	79.0	204.0	70.0	614.0
09	68.0	694.0	69.0	136.0
10	114.0	600.0	140.0	113.0
11	120.0	484.0	81.0	282.0
12	369.0	109.0	399.0	90.0
13	84.0	32.0	803.0	48.0
14	158.0	36.0	742.0	31.0
15	101.0	729.0	51.0	86.0
16	69.0	203.0	86.0	609.0
17	700.0	152.0	107.0	8.0
18	903.0	18.0	30.0	16.0
19	17.0	26.0	898.0	26.0
20	7.0	875.0	30.0	55.0
21	11.0	919.0	7.0	30.0
22	17.0	925.0	6.0	19.0
23	118.0	687.0	42.0	120.0

PFM

	A	C	G	T
01	0.598	0.121	0.211	0.07
02	0.143	0.163	0.644	0.05
03	0.607	0.202	0.122	0.069
04	0.646	0.113	0.153	0.088
05	0.072	0.791	0.102	0.034
06	0.058	0.836	0.061	0.046
07	0.057	0.774	0.065	0.104
08	0.082	0.211	0.072	0.635
09	0.07	0.718	0.071	0.141
10	0.118	0.62	0.145	0.117
11	0.124	0.501	0.084	0.292
12	0.382	0.113	0.413	0.093
13	0.087	0.033	0.83	0.05
14	0.163	0.037	0.767	0.032
15	0.104	0.754	0.053	0.089
16	0.071	0.21	0.089	0.63
17	0.724	0.157	0.111	0.008
18	0.934	0.019	0.031	0.017
19	0.018	0.027	0.929	0.027
20	0.007	0.905	0.031	0.057
21	0.011	0.95	0.007	0.031
22	0.018	0.957	0.006	0.02
23	0.122	0.71	0.043	0.124

PWM

	A	C	G	T
01	0.868	-0.718	-0.168	-1.251
02	-0.555	-0.422	0.942	-1.589
03	0.883	-0.213	-0.71	-1.265
04	0.946	-0.788	-0.486	-1.032
05	-1.222	1.147	-0.883	-1.948
06	-1.439	1.202	-1.389	-1.672
07	-1.457	1.125	-1.325	-0.863
08	-1.104	-0.168	-1.222	0.928
09	-1.251	1.05	-1.236	-0.57
10	-0.744	0.905	-0.541	-0.753
11	-0.693	0.691	-1.08	0.153
12	0.42	-0.788	0.498	-0.976
13	-1.044	-1.977	1.196	-1.589
14	-0.422	-1.865	1.117	-2.007
15	-0.863	1.099	-1.53	-1.021
16	-1.236	-0.173	-1.021	0.92
17	1.059	-0.46	-0.806	-3.221
18	1.313	-2.513	-2.038	-2.62
19	-2.565	-2.173	1.307	-2.173
20	-3.33	1.281	-2.038	-1.457
21	-2.952	1.33	-3.33	-2.038
22	-2.565	1.337	-3.451	-2.464
23	-0.71	1.04	-1.717	-0.693

Standard thresholds

P-value	Threshold
0.001	1.59881
0.0005	2.80456
0.0001	5.38356