ZN681.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN681.H12INVITRO.0.P.D
Gene (human)	ZNF681 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	YYYYbbYbYvYCYdCvYCCTT
GC content	55.82%
Information content (bits; total / per base)	16.753 / 0.798
Data sources	ChIP-Seq
Aligned words	391

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.885	0.885	0.782	0.782	0.934	0.934	6.513	6.513	98.495	98.495

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.200
HGNC	HGNC:26457
MGI
EntrezGene (human)	GeneID:148213 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN681_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96N22 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN681.H12INVITRO.0.P.D.pcm
PWM	ZN681.H12INVITRO.0.P.D.pwm
PFM	ZN681.H12INVITRO.0.P.D.pfm
Alignment	ZN681.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN681.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN681.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN681.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN681.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN681.H12INVITRO.0.P.D_homer_format_0.001.txt ZN681.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN681.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	13.0	193.0	27.0	158.0
02	23.0	222.0	12.0	134.0
03	16.0	221.0	12.0	142.0
04	31.0	136.0	24.0	200.0
05	19.0	97.0	65.0	210.0
06	19.0	205.0	110.0	57.0
07	20.0	128.0	19.0	224.0
08	13.0	88.0	171.0	119.0
09	15.0	137.0	12.0	227.0
10	70.0	114.0	196.0	11.0
11	38.0	60.0	21.0	272.0
12	3.0	371.0	5.0	12.0
13	16.0	293.0	4.0	78.0
14	85.0	25.0	82.0	199.0
15	6.0	341.0	3.0	41.0
16	154.0	111.0	113.0	13.0
17	3.0	85.0	19.0	284.0
18	0.0	362.0	3.0	26.0
19	5.0	383.0	1.0	2.0
20	30.0	23.0	2.0	336.0
21	7.0	79.0	8.0	297.0

PFM

	A	C	G	T
01	0.033	0.494	0.069	0.404
02	0.059	0.568	0.031	0.343
03	0.041	0.565	0.031	0.363
04	0.079	0.348	0.061	0.512
05	0.049	0.248	0.166	0.537
06	0.049	0.524	0.281	0.146
07	0.051	0.327	0.049	0.573
08	0.033	0.225	0.437	0.304
09	0.038	0.35	0.031	0.581
10	0.179	0.292	0.501	0.028
11	0.097	0.153	0.054	0.696
12	0.008	0.949	0.013	0.031
13	0.041	0.749	0.01	0.199
14	0.217	0.064	0.21	0.509
15	0.015	0.872	0.008	0.105
16	0.394	0.284	0.289	0.033
17	0.008	0.217	0.049	0.726
18	0.0	0.926	0.008	0.066
19	0.013	0.98	0.003	0.005
20	0.077	0.059	0.005	0.859
21	0.018	0.202	0.02	0.76

PWM

	A	C	G	T
01	-1.924	0.673	-1.248	0.474
02	-1.399	0.812	-1.995	0.311
03	-1.736	0.807	-1.995	0.369
04	-1.117	0.326	-1.359	0.708
05	-1.578	-0.008	-0.4	0.757
06	-1.578	0.733	0.116	-0.529
07	-1.53	0.266	-1.578	0.821
08	-1.924	-0.103	0.553	0.194
09	-1.795	0.333	-1.995	0.834
10	-0.328	0.152	0.688	-2.072
11	-0.921	-0.479	-1.484	1.014
12	-3.095	1.323	-2.727	-1.995
13	-1.736	1.088	-2.894	-0.222
14	-0.138	-1.321	-0.173	0.703
15	-2.584	1.239	-3.095	-0.848
16	0.449	0.125	0.143	-1.924
17	-3.095	-0.138	-1.578	1.057
18	-4.197	1.298	-3.095	-1.284
19	-2.727	1.354	-3.684	-3.347
20	-1.148	-1.399	-3.347	1.224
21	-2.458	-0.209	-2.347	1.101

Standard thresholds

P-value	Threshold
0.001	2.62776
0.0005	3.79406
0.0001	6.24916