ZN680.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN680.H12RSNP.0.P.D
Gene (human)	ZNF680 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	hhRhRhCCARGAAGAWTdAGG
GC content	46.64%
Information content (bits; total / per base)	22.114 / 1.053
Data sources	ChIP-Seq
Aligned words	864

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	4 (18)	0.969	0.987	0.96	0.986	0.963	0.985	10.817	12.513	610.675	770.409

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.140
HGNC	HGNC:26897
MGI
EntrezGene (human)	GeneID:340252 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN680_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8NEM1 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	4 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN680.H12RSNP.0.P.D.pcm
PWM	ZN680.H12RSNP.0.P.D.pwm
PFM	ZN680.H12RSNP.0.P.D.pfm
Alignment	ZN680.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN680.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN680.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN680.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN680.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN680.H12RSNP.0.P.D_homer_format_0.001.txt ZN680.H12RSNP.0.P.D_homer_format_0.0005.txt ZN680.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	121.0	509.0	86.0	148.0
02	155.0	403.0	106.0	200.0
03	439.0	69.0	295.0	61.0
04	131.0	259.0	111.0	363.0
05	189.0	20.0	633.0	22.0
06	257.0	146.0	118.0	343.0
07	52.0	728.0	22.0	62.0
08	107.0	694.0	16.0	47.0
09	802.0	5.0	43.0	14.0
10	595.0	5.0	247.0	17.0
11	1.0	0.0	863.0	0.0
12	863.0	1.0	0.0	0.0
13	798.0	0.0	56.0	10.0
14	60.0	3.0	790.0	11.0
15	863.0	1.0	0.0	0.0
16	679.0	67.0	22.0	96.0
17	11.0	63.0	39.0	751.0
18	190.0	56.0	445.0	173.0
19	754.0	10.0	27.0	73.0
20	84.0	6.0	763.0	11.0
21	90.0	41.0	694.0	39.0

PFM

	A	C	G	T
01	0.14	0.589	0.1	0.171
02	0.179	0.466	0.123	0.231
03	0.508	0.08	0.341	0.071
04	0.152	0.3	0.128	0.42
05	0.219	0.023	0.733	0.025
06	0.297	0.169	0.137	0.397
07	0.06	0.843	0.025	0.072
08	0.124	0.803	0.019	0.054
09	0.928	0.006	0.05	0.016
10	0.689	0.006	0.286	0.02
11	0.001	0.0	0.999	0.0
12	0.999	0.001	0.0	0.0
13	0.924	0.0	0.065	0.012
14	0.069	0.003	0.914	0.013
15	0.999	0.001	0.0	0.0
16	0.786	0.078	0.025	0.111
17	0.013	0.073	0.045	0.869
18	0.22	0.065	0.515	0.2
19	0.873	0.012	0.031	0.084
20	0.097	0.007	0.883	0.013
21	0.104	0.047	0.803	0.045

PWM

	A	C	G	T
01	-0.573	0.853	-0.909	-0.375
02	-0.329	0.62	-0.704	-0.076
03	0.705	-1.125	0.31	-1.245
04	-0.495	0.18	-0.658	0.516
05	-0.132	-2.306	1.07	-2.218
06	0.173	-0.388	-0.598	0.46
07	-1.4	1.21	-2.218	-1.229
08	-0.695	1.162	-2.51	-1.498
09	1.306	-3.482	-1.583	-2.63
10	1.008	-3.482	0.133	-2.455
11	-4.393	-4.858	1.379	-4.858
12	1.379	-4.393	-4.858	-4.858
13	1.301	-4.858	-1.328	-2.924
14	-1.261	-3.838	1.291	-2.842
15	1.379	-4.393	-4.858	-4.858
16	1.14	-1.153	-2.218	-0.801
17	-2.842	-1.213	-1.677	1.241
18	-0.127	-1.328	0.719	-0.22
19	1.245	-2.924	-2.027	-1.07
20	-0.932	-3.343	1.256	-2.842
21	-0.865	-1.629	1.162	-1.677

Standard thresholds

P-value	Threshold
0.001	-0.85959
0.0005	0.67651
0.0001	3.91991