MotifZN680.H12INVIVO.0.P.B
Gene (human)ZNF680
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length21
ConsensushhRhRhCCARGAAGAWTdAGG
GC content46.64%
Information content (bits; total / per base)22.114 / 1.053
Data sourcesChIP-Seq
Aligned words864

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 4 (18) 0.969 0.987 0.96 0.986 0.963 0.985 10.817 12.513 610.675 770.409
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.140
HGNCHGNC:26897
MGI
EntrezGene (human)GeneID:340252
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN680_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q8NEM1
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 4 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01121.0509.086.0148.0
02155.0403.0106.0200.0
03439.069.0295.061.0
04131.0259.0111.0363.0
05189.020.0633.022.0
06257.0146.0118.0343.0
0752.0728.022.062.0
08107.0694.016.047.0
09802.05.043.014.0
10595.05.0247.017.0
111.00.0863.00.0
12863.01.00.00.0
13798.00.056.010.0
1460.03.0790.011.0
15863.01.00.00.0
16679.067.022.096.0
1711.063.039.0751.0
18190.056.0445.0173.0
19754.010.027.073.0
2084.06.0763.011.0
2190.041.0694.039.0
PFM
ACGT
010.140.5890.10.171
020.1790.4660.1230.231
030.5080.080.3410.071
040.1520.30.1280.42
050.2190.0230.7330.025
060.2970.1690.1370.397
070.060.8430.0250.072
080.1240.8030.0190.054
090.9280.0060.050.016
100.6890.0060.2860.02
110.0010.00.9990.0
120.9990.0010.00.0
130.9240.00.0650.012
140.0690.0030.9140.013
150.9990.0010.00.0
160.7860.0780.0250.111
170.0130.0730.0450.869
180.220.0650.5150.2
190.8730.0120.0310.084
200.0970.0070.8830.013
210.1040.0470.8030.045
PWM
ACGT
01-0.5730.853-0.909-0.375
02-0.3290.62-0.704-0.076
030.705-1.1250.31-1.245
04-0.4950.18-0.6580.516
05-0.132-2.3061.07-2.218
060.173-0.388-0.5980.46
07-1.41.21-2.218-1.229
08-0.6951.162-2.51-1.498
091.306-3.482-1.583-2.63
101.008-3.4820.133-2.455
11-4.393-4.8581.379-4.858
121.379-4.393-4.858-4.858
131.301-4.858-1.328-2.924
14-1.261-3.8381.291-2.842
151.379-4.393-4.858-4.858
161.14-1.153-2.218-0.801
17-2.842-1.213-1.6771.241
18-0.127-1.3280.719-0.22
191.245-2.924-2.027-1.07
20-0.932-3.3431.256-2.842
21-0.865-1.6291.162-1.677
Standard thresholds
P-value Threshold
0.001 -0.85959
0.0005 0.67651
0.0001 3.91991