MotifZN677.H12INVIVO.0.P.C
Gene (human)ZNF677
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length19
ConsensusRCTRWTCTTdYYdRKdTYY
GC content45.59%
Information content (bits; total / per base)17.263 / 0.909
Data sourcesChIP-Seq
Aligned words261

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (7) 0.913 0.953 0.901 0.943 0.915 0.957 6.115 7.713 430.523 542.398
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.99
HGNCHGNC:28730
MGI
EntrezGene (human)GeneID:342926
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN677_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q86XU0
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0162.028.0154.017.0
0227.0210.010.014.0
0330.010.09.0212.0
0433.015.0201.012.0
0533.015.021.0192.0
061.01.013.0246.0
070.0257.01.03.0
088.05.01.0247.0
091.06.01.0253.0
10114.018.084.045.0
1111.066.020.0164.0
1212.0134.02.0113.0
1355.06.0133.067.0
1490.09.0147.015.0
1525.012.0170.054.0
1640.036.0125.060.0
1716.016.06.0223.0
185.0108.05.0143.0
1912.0194.012.043.0
PFM
ACGT
010.2380.1070.590.065
020.1030.8050.0380.054
030.1150.0380.0340.812
040.1260.0570.770.046
050.1260.0570.080.736
060.0040.0040.050.943
070.00.9850.0040.011
080.0310.0190.0040.946
090.0040.0230.0040.969
100.4370.0690.3220.172
110.0420.2530.0770.628
120.0460.5130.0080.433
130.2110.0230.510.257
140.3450.0340.5630.057
150.0960.0460.6510.207
160.1530.1380.4790.23
170.0610.0610.0230.854
180.0190.4140.0190.548
190.0460.7430.0460.165
PWM
ACGT
01-0.05-0.8190.847-1.287
02-0.8531.154-1.766-1.466
03-0.753-1.766-1.8581.164
04-0.662-1.4031.111-1.605
05-0.662-1.403-1.0911.065
06-3.328-3.328-1.5331.312
07-3.8691.355-3.328-2.72
08-1.96-2.344-3.3281.316
09-3.328-2.199-3.3281.34
100.549-1.2350.248-0.362
11-1.6820.011-1.1360.909
12-1.6050.709-2.9780.54
13-0.167-2.1990.7010.026
140.316-1.8580.801-1.403
15-0.926-1.6050.945-0.185
16-0.476-0.5780.64-0.082
17-1.343-1.343-2.1991.214
18-2.3440.496-2.3440.773
19-1.6051.076-1.605-0.406
Standard thresholds
P-value Threshold
0.001 2.60006
0.0005 3.75436
0.0001 6.19366