ZN677.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN677.H12INVITRO.0.P.D
Gene (human)	ZNF677 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	19
Consensus	RCTRWTCTTdYYdRKdTYY
GC content	45.59%
Information content (bits; total / per base)	17.263 / 0.909
Data sources	ChIP-Seq
Aligned words	261

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.913	0.953	0.901	0.943	0.915	0.957	6.115	7.713	430.523	542.398

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.99
HGNC	HGNC:28730
MGI
EntrezGene (human)	GeneID:342926 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN677_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q86XU0 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN677.H12INVITRO.0.P.D.pcm
PWM	ZN677.H12INVITRO.0.P.D.pwm
PFM	ZN677.H12INVITRO.0.P.D.pfm
Alignment	ZN677.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN677.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN677.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN677.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN677.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN677.H12INVITRO.0.P.D_homer_format_0.001.txt ZN677.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN677.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	62.0	28.0	154.0	17.0
02	27.0	210.0	10.0	14.0
03	30.0	10.0	9.0	212.0
04	33.0	15.0	201.0	12.0
05	33.0	15.0	21.0	192.0
06	1.0	1.0	13.0	246.0
07	0.0	257.0	1.0	3.0
08	8.0	5.0	1.0	247.0
09	1.0	6.0	1.0	253.0
10	114.0	18.0	84.0	45.0
11	11.0	66.0	20.0	164.0
12	12.0	134.0	2.0	113.0
13	55.0	6.0	133.0	67.0
14	90.0	9.0	147.0	15.0
15	25.0	12.0	170.0	54.0
16	40.0	36.0	125.0	60.0
17	16.0	16.0	6.0	223.0
18	5.0	108.0	5.0	143.0
19	12.0	194.0	12.0	43.0

PFM

	A	C	G	T
01	0.238	0.107	0.59	0.065
02	0.103	0.805	0.038	0.054
03	0.115	0.038	0.034	0.812
04	0.126	0.057	0.77	0.046
05	0.126	0.057	0.08	0.736
06	0.004	0.004	0.05	0.943
07	0.0	0.985	0.004	0.011
08	0.031	0.019	0.004	0.946
09	0.004	0.023	0.004	0.969
10	0.437	0.069	0.322	0.172
11	0.042	0.253	0.077	0.628
12	0.046	0.513	0.008	0.433
13	0.211	0.023	0.51	0.257
14	0.345	0.034	0.563	0.057
15	0.096	0.046	0.651	0.207
16	0.153	0.138	0.479	0.23
17	0.061	0.061	0.023	0.854
18	0.019	0.414	0.019	0.548
19	0.046	0.743	0.046	0.165

PWM

	A	C	G	T
01	-0.05	-0.819	0.847	-1.287
02	-0.853	1.154	-1.766	-1.466
03	-0.753	-1.766	-1.858	1.164
04	-0.662	-1.403	1.111	-1.605
05	-0.662	-1.403	-1.091	1.065
06	-3.328	-3.328	-1.533	1.312
07	-3.869	1.355	-3.328	-2.72
08	-1.96	-2.344	-3.328	1.316
09	-3.328	-2.199	-3.328	1.34
10	0.549	-1.235	0.248	-0.362
11	-1.682	0.011	-1.136	0.909
12	-1.605	0.709	-2.978	0.54
13	-0.167	-2.199	0.701	0.026
14	0.316	-1.858	0.801	-1.403
15	-0.926	-1.605	0.945	-0.185
16	-0.476	-0.578	0.64	-0.082
17	-1.343	-1.343	-2.199	1.214
18	-2.344	0.496	-2.344	0.773
19	-1.605	1.076	-1.605	-0.406

Standard thresholds

P-value	Threshold
0.001	2.60006
0.0005	3.75436
0.0001	6.19366