ZN675.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN675.H12INVIVO.0.P.C
Gene (human)	ZNF675 (GeneCards)
Gene synonyms (human)	TIZ
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	25
Consensus	RGAGGCCTAGGAGGAAAAAATGGTT
GC content	47.82%
Information content (bits; total / per base)	39.326 / 1.573
Data sources	ChIP-Seq
Aligned words	937

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.983	0.984	0.982	0.983	0.981	0.982	19.824	19.904	1058.547	1063.638

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF100-like {2.3.3.59} (TFClass)
TFClass ID	TFClass: 2.3.3.59.6
HGNC	HGNC:30768
MGI
EntrezGene (human)	GeneID:171392 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN675_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8TD23 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN675.H12INVIVO.0.P.C.pcm
PWM	ZN675.H12INVIVO.0.P.C.pwm
PFM	ZN675.H12INVIVO.0.P.C.pfm
Alignment	ZN675.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN675.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN675.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN675.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN675.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN675.H12INVIVO.0.P.C_homer_format_0.001.txt ZN675.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN675.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	436.0	9.0	472.0	20.0
02	31.0	12.0	891.0	3.0
03	905.0	3.0	22.0	7.0
04	10.0	0.0	923.0	4.0
05	10.0	3.0	919.0	5.0
06	20.0	823.0	15.0	79.0
07	16.0	838.0	6.0	77.0
08	16.0	118.0	13.0	790.0
09	893.0	7.0	33.0	4.0
10	35.0	0.0	901.0	1.0
11	26.0	1.0	908.0	2.0
12	921.0	0.0	13.0	3.0
13	17.0	0.0	914.0	6.0
14	21.0	1.0	906.0	9.0
15	731.0	14.0	189.0	3.0
16	799.0	98.0	15.0	25.0
17	869.0	13.0	13.0	42.0
18	787.0	6.0	131.0	13.0
19	935.0	0.0	2.0	0.0
20	824.0	2.0	102.0	9.0
21	7.0	30.0	9.0	891.0
22	14.0	0.0	918.0	5.0
23	53.0	11.0	835.0	38.0
24	4.0	23.0	8.0	902.0
25	9.0	15.0	16.0	897.0

PFM

	A	C	G	T
01	0.465	0.01	0.504	0.021
02	0.033	0.013	0.951	0.003
03	0.966	0.003	0.023	0.007
04	0.011	0.0	0.985	0.004
05	0.011	0.003	0.981	0.005
06	0.021	0.878	0.016	0.084
07	0.017	0.894	0.006	0.082
08	0.017	0.126	0.014	0.843
09	0.953	0.007	0.035	0.004
10	0.037	0.0	0.962	0.001
11	0.028	0.001	0.969	0.002
12	0.983	0.0	0.014	0.003
13	0.018	0.0	0.975	0.006
14	0.022	0.001	0.967	0.01
15	0.78	0.015	0.202	0.003
16	0.853	0.105	0.016	0.027
17	0.927	0.014	0.014	0.045
18	0.84	0.006	0.14	0.014
19	0.998	0.0	0.002	0.0
20	0.879	0.002	0.109	0.01
21	0.007	0.032	0.01	0.951
22	0.015	0.0	0.98	0.005
23	0.057	0.012	0.891	0.041
24	0.004	0.025	0.009	0.963
25	0.01	0.016	0.017	0.957

PWM

	A	C	G	T
01	0.618	-3.092	0.697	-2.386
02	-1.976	-2.845	1.331	-3.914
03	1.346	-3.914	-2.298	-3.299
04	-3.003	-4.927	1.366	-3.721
05	-3.003	-3.914	1.361	-3.56
06	-2.386	1.251	-2.648	-1.073
07	-2.589	1.269	-3.421	-1.098
08	-2.589	-0.679	-2.775	1.211
09	1.333	-3.299	-1.917	-3.721
10	-1.861	-4.927	1.342	-4.466
11	-2.142	-4.466	1.349	-4.152
12	1.364	-4.927	-2.775	-3.914
13	-2.535	-4.927	1.356	-3.421
14	-2.341	-4.466	1.347	-3.092
15	1.133	-2.709	-0.213	-3.914
16	1.222	-0.861	-2.648	-2.179
17	1.306	-2.775	-2.775	-1.686
18	1.207	-3.421	-0.575	-2.775
19	1.379	-4.927	-4.152	-4.927
20	1.253	-4.152	-0.822	-3.092
21	-3.299	-2.007	-3.092	1.331
22	-2.709	-4.927	1.36	-3.56
23	-1.462	-2.921	1.266	-1.782
24	-3.721	-2.256	-3.19	1.343
25	-3.092	-2.648	-2.589	1.337

Standard thresholds

P-value	Threshold
0.001	-14.06254
0.0005	-11.90649
0.0001	-7.26444