ZN674.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN674.H12RSNP.0.P.D
Gene (human)	ZNF674 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	bvhGGYGvTCCYbSKbb
GC content	68.57%
Information content (bits; total / per base)	13.299 / 0.782
Data sources	ChIP-Seq
Aligned words	773

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.815	0.82	0.749	0.756	0.779	0.796	3.267	3.321	237.37	271.854

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	Unclassified {2.3.4.0} (TFClass)
TFClass ID	TFClass: 2.3.4.0.57
HGNC	HGNC:17625
MGI
EntrezGene (human)	GeneID:641339 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN674_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q2M3X9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN674.H12RSNP.0.P.D.pcm
PWM	ZN674.H12RSNP.0.P.D.pwm
PFM	ZN674.H12RSNP.0.P.D.pfm
Alignment	ZN674.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN674.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN674.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN674.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN674.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN674.H12RSNP.0.P.D_homer_format_0.001.txt ZN674.H12RSNP.0.P.D_homer_format_0.0005.txt ZN674.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	76.0	277.0	144.0	276.0
02	134.0	347.0	200.0	92.0
03	81.0	251.0	50.0	391.0
04	16.0	3.0	592.0	162.0
05	6.0	16.0	685.0	66.0
06	18.0	366.0	105.0	284.0
07	85.0	7.0	673.0	8.0
08	190.0	278.0	240.0	65.0
09	5.0	8.0	0.0	760.0
10	0.0	717.0	53.0	3.0
11	1.0	770.0	1.0	1.0
12	9.0	448.0	5.0	311.0
13	36.0	226.0	214.0	297.0
14	63.0	266.0	401.0	43.0
15	79.0	49.0	560.0	85.0
16	104.0	373.0	190.0	106.0
17	57.0	364.0	132.0	220.0

PFM

	A	C	G	T
01	0.098	0.358	0.186	0.357
02	0.173	0.449	0.259	0.119
03	0.105	0.325	0.065	0.506
04	0.021	0.004	0.766	0.21
05	0.008	0.021	0.886	0.085
06	0.023	0.473	0.136	0.367
07	0.11	0.009	0.871	0.01
08	0.246	0.36	0.31	0.084
09	0.006	0.01	0.0	0.983
10	0.0	0.928	0.069	0.004
11	0.001	0.996	0.001	0.001
12	0.012	0.58	0.006	0.402
13	0.047	0.292	0.277	0.384
14	0.082	0.344	0.519	0.056
15	0.102	0.063	0.724	0.11
16	0.135	0.483	0.246	0.137
17	0.074	0.471	0.171	0.285

PWM

	A	C	G	T
01	-0.92	0.357	-0.291	0.354
02	-0.362	0.582	0.034	-0.733
03	-0.858	0.26	-1.328	0.7
04	-2.401	-3.733	1.114	-0.175
05	-3.236	-2.401	1.259	-1.058
06	-2.294	0.635	-0.603	0.382
07	-0.811	-3.114	1.242	-3.004
08	-0.017	0.361	0.215	-1.073
09	-3.376	-3.004	-4.764	1.363
10	-4.764	1.305	-1.271	-3.733
11	-4.293	1.376	-4.293	-4.293
12	-2.906	0.836	-3.376	0.473
13	-1.644	0.155	0.101	0.427
14	-1.103	0.317	0.726	-1.473
15	-0.882	-1.347	1.058	-0.811
16	-0.612	0.653	-0.017	-0.594
17	-1.201	0.629	-0.377	0.129

Standard thresholds

P-value	Threshold
0.001	3.66191
0.0005	4.77386
0.0001	7.04491