ZN671.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN671.H12INVIVO.0.P.C
Gene (human)	ZNF671 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	23
Consensus	KRRdKGAdTGGAdKRRdvdGdRR
GC content	51.76%
Information content (bits; total / per base)	16.366 / 0.712
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.653	0.669	0.438	0.444	0.89	0.912	7.578	8.392	50.254	66.602

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF134-like {2.3.4.24} (TFClass)
TFClass ID	TFClass: 2.3.4.24.2
HGNC	HGNC:26279
MGI
EntrezGene (human)	GeneID:79891 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN671_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8TAW3 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN671.H12INVIVO.0.P.C.pcm
PWM	ZN671.H12INVIVO.0.P.C.pwm
PFM	ZN671.H12INVIVO.0.P.C.pfm
Alignment	ZN671.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN671.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN671.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN671.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN671.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN671.H12INVIVO.0.P.C_homer_format_0.001.txt ZN671.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN671.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	119.25	58.25	583.25	239.25
02	461.25	86.25	419.25	33.25
03	551.25	66.25	277.25	105.25
04	231.25	57.25	221.25	490.25
05	83.25	59.25	522.25	335.25
06	172.25	7.25	816.25	4.25
07	869.25	18.25	106.25	6.25
08	337.25	52.25	431.25	179.25
09	51.25	54.25	87.25	807.25
10	14.25	5.25	976.25	4.25
11	3.25	8.25	986.25	2.25
12	948.25	26.25	18.25	7.25
13	366.0	13.0	247.0	374.0
14	15.0	179.0	354.0	452.0
15	254.0	75.0	619.0	52.0
16	242.0	88.0	629.0	41.0
17	496.0	81.0	179.0	244.0
18	362.0	170.0	368.0	100.0
19	168.0	36.0	373.0	423.0
20	98.0	50.0	807.0	45.0
21	128.0	73.0	495.0	304.0
22	445.0	25.0	456.0	74.0
23	288.0	54.0	590.0	68.0

PFM

	A	C	G	T
01	0.119	0.058	0.583	0.239
02	0.461	0.086	0.419	0.033
03	0.551	0.066	0.277	0.105
04	0.231	0.057	0.221	0.49
05	0.083	0.059	0.522	0.335
06	0.172	0.007	0.816	0.004
07	0.869	0.018	0.106	0.006
08	0.337	0.052	0.431	0.179
09	0.051	0.054	0.087	0.807
10	0.014	0.005	0.976	0.004
11	0.003	0.008	0.986	0.002
12	0.948	0.026	0.018	0.007
13	0.366	0.013	0.247	0.374
14	0.015	0.179	0.354	0.452
15	0.254	0.075	0.619	0.052
16	0.242	0.088	0.629	0.041
17	0.496	0.081	0.179	0.244
18	0.362	0.17	0.368	0.1
19	0.168	0.036	0.373	0.423
20	0.098	0.05	0.807	0.045
21	0.128	0.073	0.495	0.304
22	0.445	0.025	0.456	0.074
23	0.288	0.054	0.59	0.068

PWM

	A	C	G	T
01	-0.733	-1.434	0.843	-0.044
02	0.609	-1.051	0.514	-1.974
03	0.787	-1.309	0.103	-0.856
04	-0.077	-1.451	-0.121	0.67
05	-1.086	-1.418	0.733	0.292
06	-0.369	-3.334	1.178	-3.74
07	1.241	-2.534	-0.846	-3.452
08	0.298	-1.54	0.542	-0.33
09	-1.558	-1.503	-1.04	1.167
10	-2.757	-3.586	1.357	-3.74
11	-3.924	-3.228	1.367	-4.148
12	1.328	-2.197	-2.534	-3.334
13	0.379	-2.839	-0.012	0.401
14	-2.711	-0.331	0.346	0.589
15	0.016	-1.188	0.903	-1.544
16	-0.032	-1.032	0.919	-1.774
17	0.682	-1.113	-0.331	-0.024
18	0.368	-0.382	0.384	-0.906
19	-0.394	-1.898	0.398	0.523
20	-0.926	-1.582	1.167	-1.684
21	-0.663	-1.215	0.68	0.194
22	0.574	-2.243	0.598	-1.201
23	0.141	-1.508	0.855	-1.284

Standard thresholds

P-value	Threshold
0.001	2.60061
0.0005	3.78386
0.0001	6.26481