ZN669.H12INVIVO.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN669.H12INVIVO.1.P.C
Gene (human)	ZNF669 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	12
Consensus	YGGTCATCGSCC
GC content	67.94%
Information content (bits; total / per base)	17.063 / 1.422
Data sources	ChIP-Seq
Aligned words	223

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.647	0.983	0.628	0.979	0.581	0.979	3.203	7.84	91.721	132.77

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.4
HGNC	HGNC:25736
MGI
EntrezGene (human)	GeneID:79862 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN669_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96BR6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN669.H12INVIVO.1.P.C.pcm
PWM	ZN669.H12INVIVO.1.P.C.pwm
PFM	ZN669.H12INVIVO.1.P.C.pfm
Alignment	ZN669.H12INVIVO.1.P.C.words.tsv
Threshold to P-value map	ZN669.H12INVIVO.1.P.C.thr
Motif in other formats
JASPAR format	ZN669.H12INVIVO.1.P.C_jaspar_format.txt
MEME format	ZN669.H12INVIVO.1.P.C_meme_format.meme
Transfac format	ZN669.H12INVIVO.1.P.C_transfac_format.txt
Homer format	ZN669.H12INVIVO.1.P.C_homer_format_0.001.txt ZN669.H12INVIVO.1.P.C_homer_format_0.0005.txt ZN669.H12INVIVO.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	6.0	111.0	9.0	97.0
02	47.0	1.0	171.0	4.0
03	3.0	1.0	219.0	0.0
04	3.0	1.0	12.0	207.0
05	0.0	223.0	0.0	0.0
06	164.0	0.0	58.0	1.0
07	0.0	3.0	5.0	215.0
08	1.0	217.0	0.0	5.0
09	67.0	0.0	155.0	1.0
10	10.0	101.0	93.0	19.0
11	0.0	221.0	1.0	1.0
12	1.0	216.0	0.0	6.0

PFM

	A	C	G	T
01	0.027	0.498	0.04	0.435
02	0.211	0.004	0.767	0.018
03	0.013	0.004	0.982	0.0
04	0.013	0.004	0.054	0.928
05	0.0	1.0	0.0	0.0
06	0.735	0.0	0.26	0.004
07	0.0	0.013	0.022	0.964
08	0.004	0.973	0.0	0.022
09	0.3	0.0	0.695	0.004
10	0.045	0.453	0.417	0.085
11	0.0	0.991	0.004	0.004
12	0.004	0.969	0.0	0.027

PWM

	A	C	G	T
01	-2.05	0.677	-1.708	0.544
02	-0.166	-3.19	1.105	-2.367
03	-2.574	-3.19	1.35	-3.743
04	-2.574	-3.19	-1.453	1.294
05	-3.743	1.368	-3.743	-3.743
06	1.063	-3.743	0.039	-3.19
07	-3.743	-2.574	-2.196	1.332
08	-3.19	1.341	-3.743	-2.196
09	0.18	-3.743	1.007	-3.19
10	-1.615	0.584	0.502	-1.032
11	-3.743	1.359	-3.19	-3.19
12	-3.19	1.337	-3.743	-2.05

Standard thresholds

P-value	Threshold
0.001	1.98942
0.0005	3.339915
0.0001	5.99192