ZN669.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN669.H12INVITRO.0.P.D
Gene (human)	ZNF669 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	ShRKYhRSARYRGTCRTCRbCCM
GC content	57.49%
Information content (bits; total / per base)	20.379 / 0.886
Data sources	ChIP-Seq
Aligned words	404

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.672	0.989	0.648	0.983	0.648	0.992	6.302	15.394	80.456	132.602

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.4
HGNC	HGNC:25736
MGI
EntrezGene (human)	GeneID:79862 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN669_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96BR6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN669.H12INVITRO.0.P.D.pcm
PWM	ZN669.H12INVITRO.0.P.D.pwm
PFM	ZN669.H12INVITRO.0.P.D.pfm
Alignment	ZN669.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN669.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN669.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN669.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN669.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN669.H12INVITRO.0.P.D_homer_format_0.001.txt ZN669.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN669.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	39.0	56.0	274.0	35.0
02	94.0	115.0	36.0	159.0
03	266.0	32.0	80.0	26.0
04	39.0	44.0	273.0	48.0
05	26.0	248.0	21.0	109.0
06	66.0	79.0	36.0	223.0
07	310.0	24.0	55.0	15.0
08	44.0	55.0	283.0	22.0
09	344.0	17.0	14.0	29.0
10	56.0	45.0	283.0	20.0
11	26.0	183.0	27.0	168.0
12	101.0	19.0	270.0	14.0
13	42.0	4.0	353.0	5.0
14	8.0	5.0	44.0	347.0
15	3.0	392.0	8.0	1.0
16	290.0	9.0	99.0	6.0
17	5.0	10.0	24.0	365.0
18	8.0	364.0	11.0	21.0
19	156.0	6.0	232.0	10.0
20	22.0	178.0	158.0	46.0
21	11.0	380.0	6.0	7.0
22	14.0	370.0	7.0	13.0
23	263.0	92.0	21.0	28.0

PFM

	A	C	G	T
01	0.097	0.139	0.678	0.087
02	0.233	0.285	0.089	0.394
03	0.658	0.079	0.198	0.064
04	0.097	0.109	0.676	0.119
05	0.064	0.614	0.052	0.27
06	0.163	0.196	0.089	0.552
07	0.767	0.059	0.136	0.037
08	0.109	0.136	0.7	0.054
09	0.851	0.042	0.035	0.072
10	0.139	0.111	0.7	0.05
11	0.064	0.453	0.067	0.416
12	0.25	0.047	0.668	0.035
13	0.104	0.01	0.874	0.012
14	0.02	0.012	0.109	0.859
15	0.007	0.97	0.02	0.002
16	0.718	0.022	0.245	0.015
17	0.012	0.025	0.059	0.903
18	0.02	0.901	0.027	0.052
19	0.386	0.015	0.574	0.025
20	0.054	0.441	0.391	0.114
21	0.027	0.941	0.015	0.017
22	0.035	0.916	0.017	0.032
23	0.651	0.228	0.052	0.069

PWM

	A	C	G	T
01	-0.929	-0.578	0.989	-1.033
02	-0.071	0.128	-1.006	0.448
03	0.959	-1.118	-0.229	-1.316
04	-0.929	-0.812	0.985	-0.728
05	-1.316	0.89	-1.516	0.075
06	-0.418	-0.242	-1.006	0.784
07	1.112	-1.391	-0.596	-1.826
08	-0.812	-0.596	1.021	-1.473
09	1.215	-1.712	-1.889	-1.212
10	-0.578	-0.79	1.021	-1.562
11	-1.316	0.588	-1.28	0.503
12	0.0	-1.609	0.974	-1.889
13	-0.857	-2.925	1.241	-2.758
14	-2.379	-2.758	-0.812	1.224
15	-3.126	1.345	-2.379	-3.713
16	1.045	-2.278	-0.02	-2.615
17	-2.758	-2.187	-1.391	1.274
18	-2.379	1.271	-2.104	-1.516
19	0.43	-2.615	0.823	-2.187
20	-1.473	0.56	0.442	-0.769
21	-2.104	1.314	-2.615	-2.49
22	-1.889	1.288	-2.49	-1.956
23	0.948	-0.092	-1.516	-1.245

Standard thresholds

P-value	Threshold
0.001	1.41136
0.0005	2.64696
0.0001	5.28531