ZN667.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN667.H12RSNP.0.P.D
Gene (human)	ZNF667 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf667
Gene synonyms (mouse)	Mip1, Zfp667
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	20
Consensus	dSdKbCYdYhvRAKYYCMnY
GC content	52.4%
Information content (bits; total / per base)	11.06 / 0.553
Data sources	ChIP-Seq
Aligned words	929

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.83	0.833	0.798	0.809	0.831	0.832	5.681	5.785	69.886	88.319

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.179
HGNC	HGNC:28854
MGI	MGI:2442757
EntrezGene (human)	GeneID:63934 (SSTAR profile)
EntrezGene (mouse)	GeneID:384763 (SSTAR profile)
UniProt ID (human)	ZN667_HUMAN
UniProt ID (mouse)	ZN667_MOUSE
UniProt AC (human)	Q5HYK9 (TFClass)
UniProt AC (mouse)	Q2TL60 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN667.H12RSNP.0.P.D.pcm
PWM	ZN667.H12RSNP.0.P.D.pwm
PFM	ZN667.H12RSNP.0.P.D.pfm
Alignment	ZN667.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN667.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN667.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN667.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN667.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN667.H12RSNP.0.P.D_homer_format_0.001.txt ZN667.H12RSNP.0.P.D_homer_format_0.0005.txt ZN667.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	188.0	112.0	206.0	423.0
02	102.0	145.0	590.0	92.0
03	273.0	85.0	154.0	417.0
04	60.0	44.0	556.0	269.0
05	61.0	169.0	466.0	233.0
06	25.0	802.0	58.0	44.0
07	70.0	568.0	17.0	274.0
08	202.0	86.0	104.0	537.0
09	82.0	192.0	80.0	575.0
10	461.0	176.0	55.0	237.0
11	458.0	228.0	125.0	118.0
12	364.0	143.0	403.0	19.0
13	752.0	54.0	79.0	44.0
14	67.0	58.0	688.0	116.0
15	20.0	685.0	27.0	197.0
16	51.0	292.0	9.0	577.0
17	20.0	752.0	81.0	76.0
18	500.0	311.0	25.0	93.0
19	125.0	268.0	235.0	301.0
20	103.0	567.0	40.0	219.0

PFM

	A	C	G	T
01	0.202	0.121	0.222	0.455
02	0.11	0.156	0.635	0.099
03	0.294	0.091	0.166	0.449
04	0.065	0.047	0.598	0.29
05	0.066	0.182	0.502	0.251
06	0.027	0.863	0.062	0.047
07	0.075	0.611	0.018	0.295
08	0.217	0.093	0.112	0.578
09	0.088	0.207	0.086	0.619
10	0.496	0.189	0.059	0.255
11	0.493	0.245	0.135	0.127
12	0.392	0.154	0.434	0.02
13	0.809	0.058	0.085	0.047
14	0.072	0.062	0.741	0.125
15	0.022	0.737	0.029	0.212
16	0.055	0.314	0.01	0.621
17	0.022	0.809	0.087	0.082
18	0.538	0.335	0.027	0.1
19	0.135	0.288	0.253	0.324
20	0.111	0.61	0.043	0.236

PWM

	A	C	G	T
01	-0.21	-0.722	-0.119	0.596
02	-0.814	-0.467	0.928	-0.915
03	0.161	-0.993	-0.407	0.582
04	-1.333	-1.633	0.869	0.146
05	-1.317	-0.315	0.693	0.003
06	-2.17	1.234	-1.366	-1.633
07	-1.183	0.89	-2.526	0.164
08	-0.138	-0.981	-0.794	0.834
09	-1.028	-0.189	-1.052	0.902
10	0.682	-0.275	-1.417	0.02
11	0.675	-0.018	-0.613	-0.67
12	0.447	-0.48	0.548	-2.425
13	1.17	-1.435	-1.064	-1.633
14	-1.225	-1.366	1.081	-0.687
15	-2.377	1.077	-2.098	-0.163
16	-1.49	0.227	-3.084	0.906
17	-2.377	1.17	-1.04	-1.102
18	0.763	0.29	-2.17	-0.904
19	-0.613	0.142	0.012	0.258
20	-0.804	0.888	-1.724	-0.058

Standard thresholds

P-value	Threshold
0.001	4.48206
0.0005	5.31441
0.0001	7.06966