ZN664.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN664.H12INVIVO.0.P.C
Gene (human)	ZNF664 (GeneCards)
Gene synonyms (human)	ZFOC1, ZNF176
Gene (mouse)	Znf664
Gene synonyms (mouse)	Zfp664
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	19
Consensus	dTTWAhTGAGhWvhTRYWd
GC content	28.12%
Information content (bits; total / per base)	15.894 / 0.837
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.945	0.952	0.913	0.923	0.948	0.951	6.197	6.634	396.569	459.137

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.84
HGNC	HGNC:25406
MGI	MGI:2442505
EntrezGene (human)	GeneID:144348 (SSTAR profile)
EntrezGene (mouse)	GeneID:269704 (SSTAR profile)
UniProt ID (human)	ZN664_HUMAN
UniProt ID (mouse)	ZN664_MOUSE
UniProt AC (human)	Q8N3J9 (TFClass)
UniProt AC (mouse)	Q4VA44 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN664.H12INVIVO.0.P.C.pcm
PWM	ZN664.H12INVIVO.0.P.C.pwm
PFM	ZN664.H12INVIVO.0.P.C.pfm
Alignment	ZN664.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN664.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN664.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN664.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN664.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN664.H12INVIVO.0.P.C_homer_format_0.001.txt ZN664.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN664.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	467.0	102.0	206.0	225.0
02	13.0	74.0	2.0	911.0
03	62.0	3.0	13.0	922.0
04	527.0	47.0	8.0	418.0
05	818.0	46.0	94.0	42.0
06	436.0	159.0	82.0	323.0
07	6.0	7.0	2.0	985.0
08	34.0	12.0	868.0	86.0
09	969.0	6.0	6.0	19.0
10	91.0	11.0	847.0	51.0
11	404.0	439.0	69.0	88.0
12	434.0	18.0	31.0	517.0
13	480.0	221.0	157.0	142.0
14	208.0	458.0	123.0	211.0
15	98.0	25.0	30.0	847.0
16	695.0	34.0	160.0	111.0
17	74.0	529.0	76.0	321.0
18	224.0	57.0	96.0	623.0
19	473.0	86.0	139.0	302.0

PFM

	A	C	G	T
01	0.467	0.102	0.206	0.225
02	0.013	0.074	0.002	0.911
03	0.062	0.003	0.013	0.922
04	0.527	0.047	0.008	0.418
05	0.818	0.046	0.094	0.042
06	0.436	0.159	0.082	0.323
07	0.006	0.007	0.002	0.985
08	0.034	0.012	0.868	0.086
09	0.969	0.006	0.006	0.019
10	0.091	0.011	0.847	0.051
11	0.404	0.439	0.069	0.088
12	0.434	0.018	0.031	0.517
13	0.48	0.221	0.157	0.142
14	0.208	0.458	0.123	0.211
15	0.098	0.025	0.03	0.847
16	0.695	0.034	0.16	0.111
17	0.074	0.529	0.076	0.321
18	0.224	0.057	0.096	0.623
19	0.473	0.086	0.139	0.302

PWM

	A	C	G	T
01	0.622	-0.887	-0.192	-0.105
02	-2.839	-1.201	-4.213	1.288
03	-1.374	-3.975	-2.839	1.3
04	0.742	-1.642	-3.253	0.511
05	1.181	-1.663	-0.967	-1.75
06	0.553	-0.449	-1.101	0.255
07	-3.484	-3.362	-4.213	1.366
08	-1.952	-2.909	1.24	-1.054
09	1.35	-3.484	-3.484	-2.497
10	-0.999	-2.985	1.215	-1.563
11	0.477	0.56	-1.27	-1.032
12	0.549	-2.546	-2.04	0.723
13	0.649	-0.122	-0.461	-0.56
14	-0.183	0.602	-0.702	-0.168
15	-0.926	-2.243	-2.071	1.215
16	1.018	-1.952	-0.442	-0.803
17	-1.201	0.746	-1.175	0.248
18	-0.109	-1.455	-0.946	0.909
19	0.634	-1.054	-0.582	0.188

Standard thresholds

P-value	Threshold
0.001	2.77061
0.0005	3.93306
0.0001	6.37206