ZN662.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN662.H12INVITRO.0.P.D
Gene (human)	ZNF662 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	22
Consensus	hvvbCTRKCMCbbdSCThYYhb
GC content	57.96%
Information content (bits; total / per base)	14.313 / 0.651
Data sources	ChIP-Seq
Aligned words	373

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.848	0.88	0.806	0.841	0.855	0.892	5.691	6.209	110.422	115.387

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.62
HGNC	HGNC:31930
MGI
EntrezGene (human)	GeneID:389114 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN662_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6ZS27 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN662.H12INVITRO.0.P.D.pcm
PWM	ZN662.H12INVITRO.0.P.D.pwm
PFM	ZN662.H12INVITRO.0.P.D.pfm
Alignment	ZN662.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN662.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN662.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN662.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN662.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN662.H12INVITRO.0.P.D_homer_format_0.001.txt ZN662.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN662.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	75.0	109.0	47.0	142.0
02	80.0	58.0	192.0	43.0
03	204.0	58.0	88.0	23.0
04	30.0	40.0	100.0	203.0
05	2.0	350.0	12.0	9.0
06	12.0	52.0	0.0	309.0
07	248.0	18.0	59.0	48.0
08	18.0	49.0	230.0	76.0
09	10.0	332.0	5.0	26.0
10	76.0	251.0	12.0	34.0
11	10.0	317.0	15.0	31.0
12	21.0	190.0	75.0	87.0
13	39.0	61.0	72.0	201.0
14	39.0	35.0	191.0	108.0
15	5.0	266.0	90.0	12.0
16	2.0	350.0	0.0	21.0
17	28.0	29.0	15.0	301.0
18	178.0	68.0	63.0	64.0
19	29.0	227.0	34.0	83.0
20	41.0	244.0	22.0	66.0
21	63.0	95.0	33.0	182.0
22	52.0	146.0	56.0	119.0

PFM

	A	C	G	T
01	0.201	0.292	0.126	0.381
02	0.214	0.155	0.515	0.115
03	0.547	0.155	0.236	0.062
04	0.08	0.107	0.268	0.544
05	0.005	0.938	0.032	0.024
06	0.032	0.139	0.0	0.828
07	0.665	0.048	0.158	0.129
08	0.048	0.131	0.617	0.204
09	0.027	0.89	0.013	0.07
10	0.204	0.673	0.032	0.091
11	0.027	0.85	0.04	0.083
12	0.056	0.509	0.201	0.233
13	0.105	0.164	0.193	0.539
14	0.105	0.094	0.512	0.29
15	0.013	0.713	0.241	0.032
16	0.005	0.938	0.0	0.056
17	0.075	0.078	0.04	0.807
18	0.477	0.182	0.169	0.172
19	0.078	0.609	0.091	0.223
20	0.11	0.654	0.059	0.177
21	0.169	0.255	0.088	0.488
22	0.139	0.391	0.15	0.319

PWM

	A	C	G	T
01	-0.214	0.154	-0.67	0.415
02	-0.151	-0.465	0.714	-0.756
03	0.774	-0.465	-0.057	-1.353
04	-1.102	-0.826	0.069	0.769
05	-3.304	1.311	-1.95	-2.202
06	-1.95	-0.572	-4.159	1.187
07	0.968	-1.582	-0.449	-0.649
08	-1.582	-0.629	0.893	-0.201
09	-2.11	1.259	-2.682	-1.238
10	-0.201	0.98	-1.95	-0.982
11	-2.11	1.213	-1.749	-1.07
12	-1.438	0.704	-0.214	-0.068
13	-0.85	-0.416	-0.254	0.76
14	-0.85	-0.954	0.709	0.145
15	-2.682	1.038	-0.035	-1.95
16	-3.304	1.311	-4.159	-1.438
17	-1.167	-1.134	-1.749	1.161
18	0.639	-0.31	-0.385	-0.369
19	-1.134	0.88	-0.982	-0.115
20	-0.802	0.952	-1.395	-0.339
21	-0.385	0.018	-1.011	0.661
22	-0.572	0.443	-0.5	0.24

Standard thresholds

P-value	Threshold
0.001	3.71156
0.0005	4.70256
0.0001	6.79131