ZN660.H12INVIVO.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN660.H12INVIVO.0.SM.D
Gene (human)	ZNF660 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	17
Consensus	nvYTGATKvYCMhhhYb
GC content	47.58%
Information content (bits; total / per base)	13.077 / 0.769
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	9695

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.989	0.988	0.81	0.827	0.659	0.697
Overall, 2 experiments	best	0.997	0.997	0.827	0.844	0.67	0.708
Methyl HT-SELEX, 1 experiments	median	0.997	0.997	0.827	0.844	0.67	0.708
Methyl HT-SELEX, 1 experiments	best	0.997	0.997	0.827	0.844	0.67	0.708
Non-Methyl HT-SELEX, 1 experiments	median	0.982	0.98	0.793	0.81	0.648	0.685
Non-Methyl HT-SELEX, 1 experiments	best	0.982	0.98	0.793	0.81	0.648	0.685

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.91
HGNC	HGNC:26720
MGI
EntrezGene (human)	GeneID:285349 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN660_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6AZW8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZN660.H12INVIVO.0.SM.D.pcm
PWM	ZN660.H12INVIVO.0.SM.D.pwm
PFM	ZN660.H12INVIVO.0.SM.D.pfm
Alignment	ZN660.H12INVIVO.0.SM.D.words.tsv
Threshold to P-value map	ZN660.H12INVIVO.0.SM.D.thr
Motif in other formats
JASPAR format	ZN660.H12INVIVO.0.SM.D_jaspar_format.txt
MEME format	ZN660.H12INVIVO.0.SM.D_meme_format.meme
Transfac format	ZN660.H12INVIVO.0.SM.D_transfac_format.txt
Homer format	ZN660.H12INVIVO.0.SM.D_homer_format_0.001.txt ZN660.H12INVIVO.0.SM.D_homer_format_0.0005.txt ZN660.H12INVIVO.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2258.75	2996.75	2381.75	2057.75
02	5211.5	1562.5	2446.5	474.5
03	1331.0	1690.0	389.0	6285.0
04	71.0	325.0	89.0	9210.0
05	136.0	457.0	9058.0	44.0
06	9056.0	491.0	86.0	62.0
07	33.0	285.0	89.0	9288.0
08	1212.0	554.0	1770.0	6159.0
09	4316.0	1642.0	3155.0	582.0
10	296.0	7080.0	442.0	1877.0
11	276.0	8529.0	446.0	444.0
12	1053.0	7429.0	599.0	614.0
13	5492.0	1868.0	863.0	1472.0
14	2562.0	3889.0	903.0	2341.0
15	1367.0	5722.0	1057.0	1549.0
16	487.0	6288.0	556.0	2364.0
17	1284.25	1407.25	1869.25	5134.25

PFM

	A	C	G	T
01	0.233	0.309	0.246	0.212
02	0.538	0.161	0.252	0.049
03	0.137	0.174	0.04	0.648
04	0.007	0.034	0.009	0.95
05	0.014	0.047	0.934	0.005
06	0.934	0.051	0.009	0.006
07	0.003	0.029	0.009	0.958
08	0.125	0.057	0.183	0.635
09	0.445	0.169	0.325	0.06
10	0.031	0.73	0.046	0.194
11	0.028	0.88	0.046	0.046
12	0.109	0.766	0.062	0.063
13	0.566	0.193	0.089	0.152
14	0.264	0.401	0.093	0.241
15	0.141	0.59	0.109	0.16
16	0.05	0.649	0.057	0.244
17	0.132	0.145	0.193	0.53

PWM

	A	C	G	T
01	-0.07	0.212	-0.017	-0.164
02	0.765	-0.439	0.009	-1.627
03	-0.599	-0.36	-1.825	0.952
04	-3.5	-2.003	-3.28	1.334
05	-2.865	-1.664	1.318	-3.959
06	1.317	-1.593	-3.313	-3.631
07	-4.23	-2.134	-3.28	1.343
08	-0.692	-1.473	-0.314	0.932
09	0.577	-0.389	0.263	-1.424
10	-2.096	1.071	-1.698	-0.255
11	-2.165	1.257	-1.689	-1.693
12	-0.832	1.119	-1.395	-1.37
13	0.817	-0.26	-1.031	-0.498
14	0.055	0.472	-0.986	-0.035
15	-0.572	0.858	-0.829	-0.447
16	-1.601	0.953	-1.469	-0.025
17	-0.634	-0.543	-0.259	0.75

Standard thresholds

P-value	Threshold
0.001	3.82876
0.0005	4.84081
0.0001	6.95011