ZN649.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN649.H12INVIVO.0.P.C
Gene (human)	ZNF649 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	25
Consensus	GATATAATCTCCTGGTGTGCCRTTT
GC content	42.38%
Information content (bits; total / per base)	45.24 / 1.81
Data sources	ChIP-Seq
Aligned words	975

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.982	0.987	0.985	0.989	0.981	0.986	26.738	26.901	707.367	763.824

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF350-like {2.3.3.30} (TFClass)
TFClass ID	TFClass: 2.3.3.30.3
HGNC	HGNC:25741
MGI
EntrezGene (human)	GeneID:65251 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN649_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9BS31 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN649.H12INVIVO.0.P.C.pcm
PWM	ZN649.H12INVIVO.0.P.C.pwm
PFM	ZN649.H12INVIVO.0.P.C.pfm
Alignment	ZN649.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN649.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN649.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN649.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN649.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN649.H12INVIVO.0.P.C_homer_format_0.001.txt ZN649.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN649.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2.0	3.0	967.0	3.0
02	975.0	0.0	0.0	0.0
03	0.0	0.0	0.0	975.0
04	974.0	0.0	1.0	0.0
05	0.0	6.0	0.0	969.0
06	974.0	1.0	0.0	0.0
07	975.0	0.0	0.0	0.0
08	1.0	2.0	1.0	971.0
09	10.0	947.0	9.0	9.0
10	1.0	3.0	0.0	971.0
11	1.0	968.0	2.0	4.0
12	4.0	955.0	11.0	5.0
13	1.0	5.0	0.0	969.0
14	7.0	1.0	962.0	5.0
15	12.0	7.0	946.0	10.0
16	1.0	5.0	3.0	966.0
17	1.0	1.0	971.0	2.0
18	6.0	162.0	4.0	803.0
19	25.0	6.0	936.0	8.0
20	2.0	956.0	6.0	11.0
21	11.0	797.0	7.0	160.0
22	324.0	10.0	630.0	11.0
23	2.0	15.0	2.0	956.0
24	6.0	4.0	8.0	957.0
25	2.0	4.0	5.0	964.0

PFM

	A	C	G	T
01	0.002	0.003	0.992	0.003
02	1.0	0.0	0.0	0.0
03	0.0	0.0	0.0	1.0
04	0.999	0.0	0.001	0.0
05	0.0	0.006	0.0	0.994
06	0.999	0.001	0.0	0.0
07	1.0	0.0	0.0	0.0
08	0.001	0.002	0.001	0.996
09	0.01	0.971	0.009	0.009
10	0.001	0.003	0.0	0.996
11	0.001	0.993	0.002	0.004
12	0.004	0.979	0.011	0.005
13	0.001	0.005	0.0	0.994
14	0.007	0.001	0.987	0.005
15	0.012	0.007	0.97	0.01
16	0.001	0.005	0.003	0.991
17	0.001	0.001	0.996	0.002
18	0.006	0.166	0.004	0.824
19	0.026	0.006	0.96	0.008
20	0.002	0.981	0.006	0.011
21	0.011	0.817	0.007	0.164
22	0.332	0.01	0.646	0.011
23	0.002	0.015	0.002	0.981
24	0.006	0.004	0.008	0.982
25	0.002	0.004	0.005	0.989

PWM

	A	C	G	T
01	-4.189	-3.951	1.373	-3.951
02	1.381	-4.96	-4.96	-4.96
03	-4.96	-4.96	-4.96	1.381
04	1.38	-4.96	-4.502	-4.96
05	-4.96	-3.459	-4.96	1.375
06	1.38	-4.502	-4.96	-4.96
07	1.381	-4.96	-4.96	-4.96
08	-4.502	-4.189	-4.502	1.377
09	-3.042	1.352	-3.131	-3.131
10	-4.502	-3.951	-4.96	1.377
11	-4.502	1.374	-4.189	-3.759
12	-3.759	1.36	-2.96	-3.598
13	-4.502	-3.598	-4.96	1.375
14	-3.337	-4.502	1.368	-3.598
15	-2.884	-3.337	1.351	-3.042
16	-4.502	-3.598	-3.951	1.372
17	-4.502	-4.502	1.377	-4.189
18	-3.459	-0.405	-3.759	1.187
19	-2.218	-3.459	1.34	-3.229
20	-4.189	1.361	-3.459	-2.96
21	-2.96	1.18	-3.337	-0.417
22	0.283	-3.042	0.945	-2.96
23	-4.189	-2.687	-4.189	1.361
24	-3.459	-3.759	-3.229	1.362
25	-4.189	-3.759	-3.598	1.37

Standard thresholds

P-value	Threshold
0.001	-25.05094
0.0005	-22.41309
0.0001	-16.74299