ZN627.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN627.H12INVITRO.0.P.D
Gene (human)	ZNF627 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	GTAGGTCTCAACAGTGGRCTTAA
GC content	45.47%
Information content (bits; total / per base)	35.12 / 1.527
Data sources	ChIP-Seq
Aligned words	931

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.968	0.976	0.97	0.977	0.965	0.975	18.565	18.842	576.511	663.046

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.7
HGNC	HGNC:30570
MGI
EntrezGene (human)	GeneID:199692 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN627_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q7L945 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN627.H12INVITRO.0.P.D.pcm
PWM	ZN627.H12INVITRO.0.P.D.pwm
PFM	ZN627.H12INVITRO.0.P.D.pfm
Alignment	ZN627.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN627.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN627.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN627.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN627.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN627.H12INVITRO.0.P.D_homer_format_0.001.txt ZN627.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN627.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	35.0	5.0	887.0	4.0
02	14.0	64.0	17.0	836.0
03	862.0	1.0	59.0	9.0
04	18.0	1.0	908.0	4.0
05	107.0	7.0	778.0	39.0
06	0.0	24.0	0.0	907.0
07	2.0	924.0	0.0	5.0
08	2.0	9.0	1.0	919.0
09	3.0	875.0	8.0	45.0
10	909.0	3.0	15.0	4.0
11	925.0	2.0	4.0	0.0
12	37.0	784.0	25.0	85.0
13	863.0	14.0	23.0	31.0
14	117.0	31.0	766.0	17.0
15	19.0	54.0	21.0	837.0
16	150.0	7.0	751.0	23.0
17	50.0	14.0	842.0	25.0
18	98.0	56.0	740.0	37.0
19	25.0	850.0	14.0	42.0
20	21.0	42.0	3.0	865.0
21	27.0	18.0	32.0	854.0
22	858.0	21.0	23.0	29.0
23	914.0	8.0	6.0	3.0

PFM

	A	C	G	T
01	0.038	0.005	0.953	0.004
02	0.015	0.069	0.018	0.898
03	0.926	0.001	0.063	0.01
04	0.019	0.001	0.975	0.004
05	0.115	0.008	0.836	0.042
06	0.0	0.026	0.0	0.974
07	0.002	0.992	0.0	0.005
08	0.002	0.01	0.001	0.987
09	0.003	0.94	0.009	0.048
10	0.976	0.003	0.016	0.004
11	0.994	0.002	0.004	0.0
12	0.04	0.842	0.027	0.091
13	0.927	0.015	0.025	0.033
14	0.126	0.033	0.823	0.018
15	0.02	0.058	0.023	0.899
16	0.161	0.008	0.807	0.025
17	0.054	0.015	0.904	0.027
18	0.105	0.06	0.795	0.04
19	0.027	0.913	0.015	0.045
20	0.023	0.045	0.003	0.929
21	0.029	0.019	0.034	0.917
22	0.922	0.023	0.025	0.031
23	0.982	0.009	0.006	0.003

PWM

	A	C	G	T
01	-1.854	-3.554	1.332	-3.715
02	-2.703	-1.272	-2.528	1.273
03	1.304	-4.461	-1.351	-3.086
04	-2.476	-4.461	1.356	-3.715
05	-0.769	-3.293	1.202	-1.751
06	-4.921	-2.21	-4.921	1.355
07	-4.147	1.373	-4.921	-3.554
08	-4.147	-3.086	-4.461	1.368
09	-3.908	1.319	-3.184	-1.613
10	1.357	-3.908	-2.641	-3.715
11	1.374	-4.147	-3.715	-4.921
12	-1.801	1.209	-2.172	-0.995
13	1.305	-2.703	-2.25	-1.97
14	-0.681	-1.97	1.186	-2.528
15	-2.427	-1.437	-2.335	1.275
16	-0.435	-3.293	1.166	-2.25
17	-1.512	-2.703	1.281	-2.172
18	-0.855	-1.402	1.152	-1.801
19	-2.172	1.29	-2.703	-1.68
20	-2.335	-1.68	-3.908	1.307
21	-2.1	-2.476	-1.94	1.295
22	1.299	-2.335	-2.25	-2.033
23	1.362	-3.184	-3.415	-3.908

Standard thresholds

P-value	Threshold
0.001	-9.66584
0.0005	-7.71424
0.0001	-3.51694