Motif | ZN627.H12CORE.0.P.C |
Gene (human) | ZNF627 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | C |
Motif | ZN627.H12CORE.0.P.C |
Gene (human) | ZNF627 (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | C |
Motif length | 23 |
Consensus | GTAGGTCTCAACAGTGGRCTTAA |
GC content | 45.47% |
Information content (bits; total / per base) | 35.12 / 1.527 |
Data sources | ChIP-Seq |
Aligned words | 931 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 1 (4) | 0.968 | 0.976 | 0.97 | 0.977 | 0.965 | 0.975 | 18.565 | 18.842 | 576.511 | 663.046 |
TF superclass | Zinc-coordinating DNA-binding domains {2} (TFClass) |
TF class | C2H2 zinc finger factors {2.3} (TFClass) |
TF family | More than 3 adjacent zinc fingers {2.3.3} (TFClass) |
TF subfamily | ZNF763-like {2.3.3.33} (TFClass) |
TFClass ID | TFClass: 2.3.3.33.7 |
HGNC | HGNC:30570 |
MGI | |
EntrezGene (human) | GeneID:199692 (SSTAR profile) |
EntrezGene (mouse) | |
UniProt ID (human) | ZN627_HUMAN |
UniProt ID (mouse) | |
UniProt AC (human) | Q7L945 (TFClass) |
UniProt AC (mouse) | |
GRECO-DB-TF | yes |
ChIP-Seq | 1 human, 0 mouse |
HT-SELEX | 0 |
Methyl-HT-SELEX | 0 |
PCM | ZN627.H12CORE.0.P.C.pcm |
PWM | ZN627.H12CORE.0.P.C.pwm |
PFM | ZN627.H12CORE.0.P.C.pfm |
Alignment | ZN627.H12CORE.0.P.C.words.tsv |
Threshold to P-value map | ZN627.H12CORE.0.P.C.thr |
Motif in other formats | |
JASPAR format | ZN627.H12CORE.0.P.C_jaspar_format.txt |
MEME format | ZN627.H12CORE.0.P.C_meme_format.meme |
Transfac format | ZN627.H12CORE.0.P.C_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 35.0 | 5.0 | 887.0 | 4.0 |
02 | 14.0 | 64.0 | 17.0 | 836.0 |
03 | 862.0 | 1.0 | 59.0 | 9.0 |
04 | 18.0 | 1.0 | 908.0 | 4.0 |
05 | 107.0 | 7.0 | 778.0 | 39.0 |
06 | 0.0 | 24.0 | 0.0 | 907.0 |
07 | 2.0 | 924.0 | 0.0 | 5.0 |
08 | 2.0 | 9.0 | 1.0 | 919.0 |
09 | 3.0 | 875.0 | 8.0 | 45.0 |
10 | 909.0 | 3.0 | 15.0 | 4.0 |
11 | 925.0 | 2.0 | 4.0 | 0.0 |
12 | 37.0 | 784.0 | 25.0 | 85.0 |
13 | 863.0 | 14.0 | 23.0 | 31.0 |
14 | 117.0 | 31.0 | 766.0 | 17.0 |
15 | 19.0 | 54.0 | 21.0 | 837.0 |
16 | 150.0 | 7.0 | 751.0 | 23.0 |
17 | 50.0 | 14.0 | 842.0 | 25.0 |
18 | 98.0 | 56.0 | 740.0 | 37.0 |
19 | 25.0 | 850.0 | 14.0 | 42.0 |
20 | 21.0 | 42.0 | 3.0 | 865.0 |
21 | 27.0 | 18.0 | 32.0 | 854.0 |
22 | 858.0 | 21.0 | 23.0 | 29.0 |
23 | 914.0 | 8.0 | 6.0 | 3.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.038 | 0.005 | 0.953 | 0.004 |
02 | 0.015 | 0.069 | 0.018 | 0.898 |
03 | 0.926 | 0.001 | 0.063 | 0.01 |
04 | 0.019 | 0.001 | 0.975 | 0.004 |
05 | 0.115 | 0.008 | 0.836 | 0.042 |
06 | 0.0 | 0.026 | 0.0 | 0.974 |
07 | 0.002 | 0.992 | 0.0 | 0.005 |
08 | 0.002 | 0.01 | 0.001 | 0.987 |
09 | 0.003 | 0.94 | 0.009 | 0.048 |
10 | 0.976 | 0.003 | 0.016 | 0.004 |
11 | 0.994 | 0.002 | 0.004 | 0.0 |
12 | 0.04 | 0.842 | 0.027 | 0.091 |
13 | 0.927 | 0.015 | 0.025 | 0.033 |
14 | 0.126 | 0.033 | 0.823 | 0.018 |
15 | 0.02 | 0.058 | 0.023 | 0.899 |
16 | 0.161 | 0.008 | 0.807 | 0.025 |
17 | 0.054 | 0.015 | 0.904 | 0.027 |
18 | 0.105 | 0.06 | 0.795 | 0.04 |
19 | 0.027 | 0.913 | 0.015 | 0.045 |
20 | 0.023 | 0.045 | 0.003 | 0.929 |
21 | 0.029 | 0.019 | 0.034 | 0.917 |
22 | 0.922 | 0.023 | 0.025 | 0.031 |
23 | 0.982 | 0.009 | 0.006 | 0.003 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.854 | -3.554 | 1.332 | -3.715 |
02 | -2.703 | -1.272 | -2.528 | 1.273 |
03 | 1.304 | -4.461 | -1.351 | -3.086 |
04 | -2.476 | -4.461 | 1.356 | -3.715 |
05 | -0.769 | -3.293 | 1.202 | -1.751 |
06 | -4.921 | -2.21 | -4.921 | 1.355 |
07 | -4.147 | 1.373 | -4.921 | -3.554 |
08 | -4.147 | -3.086 | -4.461 | 1.368 |
09 | -3.908 | 1.319 | -3.184 | -1.613 |
10 | 1.357 | -3.908 | -2.641 | -3.715 |
11 | 1.374 | -4.147 | -3.715 | -4.921 |
12 | -1.801 | 1.209 | -2.172 | -0.995 |
13 | 1.305 | -2.703 | -2.25 | -1.97 |
14 | -0.681 | -1.97 | 1.186 | -2.528 |
15 | -2.427 | -1.437 | -2.335 | 1.275 |
16 | -0.435 | -3.293 | 1.166 | -2.25 |
17 | -1.512 | -2.703 | 1.281 | -2.172 |
18 | -0.855 | -1.402 | 1.152 | -1.801 |
19 | -2.172 | 1.29 | -2.703 | -1.68 |
20 | -2.335 | -1.68 | -3.908 | 1.307 |
21 | -2.1 | -2.476 | -1.94 | 1.295 |
22 | 1.299 | -2.335 | -2.25 | -2.033 |
23 | 1.362 | -3.184 | -3.415 | -3.908 |
P-value | Threshold |
---|---|
0.001 | -9.66584 |
0.0005 | -7.71424 |
0.0001 | -3.51694 |