ZN626.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN626.H12INVIVO.0.P.C
Gene (human)	ZNF626 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	21
Consensus	RTMhGKYTMWYdYGvYMCYTK
GC content	49.77%
Information content (bits; total / per base)	17.411 / 0.829
Data sources	ChIP-Seq
Aligned words	210

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.956	0.975	0.954	0.969	0.948	0.968	7.713	8.108	112.267	122.319

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.137
HGNC	HGNC:30461
MGI
EntrezGene (human)	GeneID:199777 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN626_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q68DY1 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN626.H12INVIVO.0.P.C.pcm
PWM	ZN626.H12INVIVO.0.P.C.pwm
PFM	ZN626.H12INVIVO.0.P.C.pfm
Alignment	ZN626.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN626.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN626.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN626.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN626.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN626.H12INVIVO.0.P.C_homer_format_0.001.txt ZN626.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN626.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	116.0	1.0	93.0	0.0
02	13.0	5.0	13.0	179.0
03	145.0	27.0	21.0	17.0
04	80.0	41.0	24.0	65.0
05	6.0	3.0	171.0	30.0
06	11.0	13.0	157.0	29.0
07	7.0	67.0	6.0	130.0
08	10.0	5.0	9.0	186.0
09	68.0	110.0	25.0	7.0
10	44.0	37.0	1.0	128.0
11	17.0	26.0	20.0	147.0
12	59.0	22.0	94.0	35.0
13	16.0	30.0	4.0	160.0
14	2.0	0.0	202.0	6.0
15	27.0	55.0	104.0	24.0
16	17.0	96.0	0.0	97.0
17	29.0	157.0	17.0	7.0
18	5.0	193.0	3.0	9.0
19	2.0	128.0	4.0	76.0
20	7.0	1.0	35.0	167.0
21	3.0	28.0	147.0	32.0

PFM

	A	C	G	T
01	0.552	0.005	0.443	0.0
02	0.062	0.024	0.062	0.852
03	0.69	0.129	0.1	0.081
04	0.381	0.195	0.114	0.31
05	0.029	0.014	0.814	0.143
06	0.052	0.062	0.748	0.138
07	0.033	0.319	0.029	0.619
08	0.048	0.024	0.043	0.886
09	0.324	0.524	0.119	0.033
10	0.21	0.176	0.005	0.61
11	0.081	0.124	0.095	0.7
12	0.281	0.105	0.448	0.167
13	0.076	0.143	0.019	0.762
14	0.01	0.0	0.962	0.029
15	0.129	0.262	0.495	0.114
16	0.081	0.457	0.0	0.462
17	0.138	0.748	0.081	0.033
18	0.024	0.919	0.014	0.043
19	0.01	0.61	0.019	0.362
20	0.033	0.005	0.167	0.795
21	0.014	0.133	0.7	0.152

PWM

	A	C	G	T
01	0.779	-3.137	0.561	-3.696
02	-1.323	-2.14	-1.323	1.209
03	1.0	-0.642	-0.88	-1.077
04	0.413	-0.24	-0.754	0.209
05	-1.993	-2.519	1.163	-0.541
06	-1.473	-1.323	1.079	-0.574
07	-1.865	0.238	-1.993	0.892
08	-1.558	-2.14	-1.65	1.247
09	0.253	0.727	-0.715	-1.865
10	-0.172	-0.34	-3.137	0.876
11	-1.077	-0.678	-0.926	1.014
12	0.114	-0.836	0.571	-0.393
13	-1.133	-0.541	-2.311	1.098
14	-2.781	-3.696	1.329	-1.993
15	-0.642	0.045	0.671	-0.754
16	-1.077	0.592	-3.696	0.602
17	-0.574	1.079	-1.077	-1.865
18	-2.14	1.284	-2.519	-1.65
19	-2.781	0.876	-2.311	0.362
20	-1.865	-3.137	-0.393	1.14
21	-2.519	-0.607	1.014	-0.479

Standard thresholds

P-value	Threshold
0.001	2.73286
0.0005	3.85831
0.0001	6.23826