ZN623.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN623.H12RSNP.0.P.D
Gene (human)	ZNF623 (GeneCards)
Gene synonyms (human)	KIAA0628
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	31
Consensus	YYYRCChCAGGGCCTTTGCACdKGCYRYKYY
GC content	61.78%
Information content (bits; total / per base)	38.601 / 1.245
Data sources	ChIP-Seq
Aligned words	972

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (7)	0.985	0.992	0.985	0.993	0.986	0.993	19.634	19.939	720.745	799.745

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.161
HGNC	HGNC:29084
MGI
EntrezGene (human)	GeneID:9831 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN623_HUMAN
UniProt ID (mouse)
UniProt AC (human)	O75123 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN623.H12RSNP.0.P.D.pcm
PWM	ZN623.H12RSNP.0.P.D.pwm
PFM	ZN623.H12RSNP.0.P.D.pfm
Alignment	ZN623.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN623.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN623.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN623.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN623.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN623.H12RSNP.0.P.D_homer_format_0.001.txt ZN623.H12RSNP.0.P.D_homer_format_0.0005.txt ZN623.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	27.0	701.0	81.0	163.0
02	51.0	761.0	41.0	119.0
03	78.0	197.0	82.0	615.0
04	327.0	13.0	626.0	6.0
05	8.0	930.0	10.0	24.0
06	5.0	954.0	2.0	11.0
07	147.0	305.0	30.0	490.0
08	0.0	969.0	1.0	2.0
09	889.0	13.0	40.0	30.0
10	2.0	2.0	964.0	4.0
11	3.0	5.0	954.0	10.0
12	160.0	31.0	773.0	8.0
13	5.0	956.0	1.0	10.0
14	17.0	946.0	1.0	8.0
15	1.0	20.0	1.0	950.0
16	0.0	1.0	0.0	971.0
17	4.0	2.0	17.0	949.0
18	4.0	1.0	966.0	1.0
19	11.0	939.0	3.0	19.0
20	937.0	13.0	13.0	9.0
21	3.0	865.0	6.0	98.0
22	326.0	130.0	192.0	324.0
23	51.0	63.0	262.0	596.0
24	84.0	83.0	786.0	19.0
25	17.0	870.0	12.0	73.0
26	63.0	134.0	56.0	719.0
27	138.0	133.0	632.0	69.0
28	27.0	174.0	66.0	705.0
29	38.0	171.0	175.0	588.0
30	52.0	637.0	84.0	199.0
31	41.0	674.0	47.0	210.0

PFM

	A	C	G	T
01	0.028	0.721	0.083	0.168
02	0.052	0.783	0.042	0.122
03	0.08	0.203	0.084	0.633
04	0.336	0.013	0.644	0.006
05	0.008	0.957	0.01	0.025
06	0.005	0.981	0.002	0.011
07	0.151	0.314	0.031	0.504
08	0.0	0.997	0.001	0.002
09	0.915	0.013	0.041	0.031
10	0.002	0.002	0.992	0.004
11	0.003	0.005	0.981	0.01
12	0.165	0.032	0.795	0.008
13	0.005	0.984	0.001	0.01
14	0.017	0.973	0.001	0.008
15	0.001	0.021	0.001	0.977
16	0.0	0.001	0.0	0.999
17	0.004	0.002	0.017	0.976
18	0.004	0.001	0.994	0.001
19	0.011	0.966	0.003	0.02
20	0.964	0.013	0.013	0.009
21	0.003	0.89	0.006	0.101
22	0.335	0.134	0.198	0.333
23	0.052	0.065	0.27	0.613
24	0.086	0.085	0.809	0.02
25	0.017	0.895	0.012	0.075
26	0.065	0.138	0.058	0.74
27	0.142	0.137	0.65	0.071
28	0.028	0.179	0.068	0.725
29	0.039	0.176	0.18	0.605
30	0.053	0.655	0.086	0.205
31	0.042	0.693	0.048	0.216

PWM

	A	C	G	T
01	-2.143	1.055	-1.085	-0.396
02	-1.535	1.137	-1.745	-0.707
03	-1.122	-0.208	-1.073	0.924
04	0.295	-2.811	0.942	-3.456
05	-3.226	1.337	-3.039	-2.253
06	-3.595	1.362	-4.186	-2.957
07	-0.498	0.226	-2.043	0.698
08	-4.958	1.378	-4.5	-4.186
09	1.292	-2.811	-1.769	-2.043
10	-4.186	-4.186	1.373	-3.756
11	-3.948	-3.595	1.362	-3.039
12	-0.414	-2.012	1.152	-3.226
13	-3.595	1.364	-4.5	-3.039
14	-2.571	1.354	-4.5	-3.226
15	-4.5	-2.422	-4.5	1.358
16	-4.958	-4.5	-4.958	1.38
17	-3.756	-4.186	-2.571	1.357
18	-3.756	-4.5	1.375	-4.5
19	-2.957	1.347	-3.948	-2.469
20	1.344	-2.811	-2.811	-3.128
21	-3.948	1.265	-3.456	-0.898
22	0.292	-0.619	-0.234	0.286
23	-1.535	-1.33	0.075	0.893
24	-1.049	-1.061	1.169	-2.469
25	-2.571	1.27	-2.881	-1.186
26	-1.33	-0.59	-1.445	1.08
27	-0.56	-0.597	0.951	-1.241
28	-2.143	-0.331	-1.285	1.061
29	-1.818	-0.348	-0.326	0.88
30	-1.516	0.959	-1.049	-0.198
31	-1.745	1.016	-1.614	-0.145

Standard thresholds

P-value	Threshold
0.001	-13.05384
0.0005	-10.93544
0.0001	-6.37459