ZN621.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN621.H12INVIVO.0.P.C
Gene (human)	ZNF621 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	19
Consensus	RRRvKSYCAGGGMWRvvhh
GC content	53.74%
Information content (bits; total / per base)	12.957 / 0.682
Data sources	ChIP-Seq
Aligned words	257

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.869	0.894	0.831	0.855	0.863	0.88	5.043	5.324	36.72	42.481

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF620-like {2.3.3.35} (TFClass)
TFClass ID	TFClass: 2.3.3.35.2
HGNC	HGNC:24787
MGI
EntrezGene (human)	GeneID:285268 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN621_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6ZSS3 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN621.H12INVIVO.0.P.C.pcm
PWM	ZN621.H12INVIVO.0.P.C.pwm
PFM	ZN621.H12INVIVO.0.P.C.pfm
Alignment	ZN621.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN621.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN621.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN621.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN621.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN621.H12INVIVO.0.P.C_homer_format_0.001.txt ZN621.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN621.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	164.0	24.0	53.0	16.0
02	178.0	29.0	42.0	8.0
03	196.0	19.0	32.0	10.0
04	86.0	44.0	110.0	17.0
05	11.0	11.0	38.0	197.0
06	12.0	204.0	25.0	16.0
07	18.0	164.0	26.0	49.0
08	23.0	215.0	6.0	13.0
09	223.0	4.0	15.0	15.0
10	18.0	3.0	216.0	20.0
11	48.0	3.0	204.0	2.0
12	26.0	14.0	206.0	11.0
13	121.0	108.0	15.0	13.0
14	184.0	8.0	18.0	47.0
15	36.0	23.0	175.0	23.0
16	93.0	50.0	95.0	19.0
17	74.0	87.0	68.0	28.0
18	47.0	68.0	37.0	105.0
19	38.0	129.0	36.0	54.0

PFM

	A	C	G	T
01	0.638	0.093	0.206	0.062
02	0.693	0.113	0.163	0.031
03	0.763	0.074	0.125	0.039
04	0.335	0.171	0.428	0.066
05	0.043	0.043	0.148	0.767
06	0.047	0.794	0.097	0.062
07	0.07	0.638	0.101	0.191
08	0.089	0.837	0.023	0.051
09	0.868	0.016	0.058	0.058
10	0.07	0.012	0.84	0.078
11	0.187	0.012	0.794	0.008
12	0.101	0.054	0.802	0.043
13	0.471	0.42	0.058	0.051
14	0.716	0.031	0.07	0.183
15	0.14	0.089	0.681	0.089
16	0.362	0.195	0.37	0.074
17	0.288	0.339	0.265	0.109
18	0.183	0.265	0.144	0.409
19	0.148	0.502	0.14	0.21

PWM

	A	C	G	T
01	0.924	-0.95	-0.188	-1.328
02	1.005	-0.77	-0.414	-1.945
03	1.101	-1.169	-0.676	-1.752
04	0.286	-0.369	0.529	-1.272
05	-1.667	-1.667	-0.511	1.106
06	-1.59	1.141	-0.911	-1.328
07	-1.22	0.924	-0.874	-0.264
08	-0.99	1.193	-2.184	-1.518
09	1.229	-2.5	-1.388	-1.388
10	-1.22	-2.705	1.198	-1.121
11	-0.284	-2.705	1.141	-2.964
12	-0.874	-1.451	1.15	-1.667
13	0.623	0.511	-1.388	-1.518
14	1.038	-1.945	-1.22	-0.305
15	-0.563	-0.99	0.989	-0.99
16	0.363	-0.245	0.384	-1.169
17	0.138	0.298	0.056	-0.804
18	-0.305	0.056	-0.536	0.483
19	-0.511	0.686	-0.563	-0.17

Standard thresholds

P-value	Threshold
0.001	4.14381
0.0005	5.03946
0.0001	6.94166