ZN616.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN616.H12INVIVO.0.P.C
Gene (human)	ZNF616 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	25
Consensus	RhRndGGYGAGYRYSdvddvhYbhv
GC content	56.09%
Information content (bits; total / per base)	14.857 / 0.594
Data sources	ChIP-Seq
Aligned words	957

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.922	0.924	0.877	0.884	0.938	0.939	6.912	6.964	329.494	367.42

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF841-like {2.3.3.79} (TFClass)
TFClass ID	TFClass: 2.3.3.79.3
HGNC	HGNC:28062
MGI
EntrezGene (human)	GeneID:90317 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN616_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q08AN1 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN616.H12INVIVO.0.P.C.pcm
PWM	ZN616.H12INVIVO.0.P.C.pwm
PFM	ZN616.H12INVIVO.0.P.C.pfm
Alignment	ZN616.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN616.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN616.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN616.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN616.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN616.H12INVIVO.0.P.C_homer_format_0.001.txt ZN616.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN616.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	181.0	97.0	587.0	92.0
02	283.0	195.0	111.0	368.0
03	300.0	55.0	512.0	90.0
04	197.0	186.0	225.0	349.0
05	381.0	26.0	382.0	168.0
06	167.0	2.0	777.0	11.0
07	37.0	13.0	890.0	17.0
08	83.0	95.0	29.0	750.0
09	204.0	1.0	750.0	2.0
10	910.0	6.0	31.0	10.0
11	39.0	1.0	917.0	0.0
12	45.0	662.0	56.0	194.0
13	345.0	33.0	559.0	20.0
14	18.0	426.0	16.0	497.0
15	133.0	200.0	591.0	33.0
16	445.0	61.0	199.0	252.0
17	168.0	250.0	418.0	121.0
18	138.0	123.0	248.0	448.0
19	475.0	89.0	263.0	130.0
20	218.0	176.0	413.0	150.0
21	131.0	224.0	113.0	489.0
22	89.0	582.0	109.0	177.0
23	115.0	552.0	153.0	137.0
24	146.0	468.0	138.0	205.0
25	394.0	182.0	228.0	153.0

PFM

	A	C	G	T
01	0.189	0.101	0.613	0.096
02	0.296	0.204	0.116	0.385
03	0.313	0.057	0.535	0.094
04	0.206	0.194	0.235	0.365
05	0.398	0.027	0.399	0.176
06	0.175	0.002	0.812	0.011
07	0.039	0.014	0.93	0.018
08	0.087	0.099	0.03	0.784
09	0.213	0.001	0.784	0.002
10	0.951	0.006	0.032	0.01
11	0.041	0.001	0.958	0.0
12	0.047	0.692	0.059	0.203
13	0.361	0.034	0.584	0.021
14	0.019	0.445	0.017	0.519
15	0.139	0.209	0.618	0.034
16	0.465	0.064	0.208	0.263
17	0.176	0.261	0.437	0.126
18	0.144	0.129	0.259	0.468
19	0.496	0.093	0.275	0.136
20	0.228	0.184	0.432	0.157
21	0.137	0.234	0.118	0.511
22	0.093	0.608	0.114	0.185
23	0.12	0.577	0.16	0.143
24	0.153	0.489	0.144	0.214
25	0.412	0.19	0.238	0.16

PWM

	A	C	G	T
01	-0.277	-0.892	0.893	-0.944
02	0.167	-0.203	-0.76	0.428
03	0.225	-1.447	0.757	-0.966
04	-0.193	-0.25	-0.061	0.375
05	0.463	-2.163	0.465	-0.351
06	-0.356	-4.172	1.173	-2.942
07	-1.828	-2.796	1.308	-2.555
08	-1.045	-0.913	-2.06	1.138
09	-0.158	-4.486	1.138	-4.172
10	1.331	-3.441	-1.997	-3.024
11	-1.778	-4.486	1.338	-4.945
12	-1.641	1.013	-1.429	-0.208
13	0.364	-1.937	0.845	-2.407
14	-2.503	0.574	-2.61	0.727
15	-0.581	-0.178	0.9	-1.937
16	0.617	-1.346	-0.183	0.052
17	-0.351	0.044	0.555	-0.675
18	-0.545	-0.659	0.036	0.624
19	0.682	-0.977	0.094	-0.604
20	-0.092	-0.304	0.543	-0.463
21	-0.596	-0.065	-0.742	0.711
22	-0.977	0.885	-0.778	-0.299
23	-0.725	0.832	-0.443	-0.552
24	-0.489	0.667	-0.545	-0.153
25	0.496	-0.271	-0.048	-0.443

Standard thresholds

P-value	Threshold
0.001	3.28541
0.0005	4.38446
0.0001	6.67081