ZN615.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN615.H12INVITRO.0.P.D
Gene (human)	ZNF615 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	20
Consensus	ARhRRMhTYAWCAdYdARRR
GC content	36.5%
Information content (bits; total / per base)	16.793 / 0.84
Data sources	ChIP-Seq
Aligned words	110

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.816	0.816	0.769	0.769	0.861	0.861	7.536	7.536	24.469	24.469

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF432-like {2.3.3.75} (TFClass)
TFClass ID	TFClass: 2.3.3.75.2
HGNC	HGNC:24740
MGI
EntrezGene (human)	GeneID:284370 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN615_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N8J6 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN615.H12INVITRO.0.P.D.pcm
PWM	ZN615.H12INVITRO.0.P.D.pwm
PFM	ZN615.H12INVITRO.0.P.D.pfm
Alignment	ZN615.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN615.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN615.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN615.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN615.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN615.H12INVITRO.0.P.D_homer_format_0.001.txt ZN615.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN615.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	95.0	5.0	7.0	3.0
02	79.0	3.0	20.0	8.0
03	19.0	57.0	5.0	29.0
04	61.0	5.0	37.0	7.0
05	68.0	7.0	29.0	6.0
06	26.0	69.0	8.0	7.0
07	30.0	17.0	8.0	55.0
08	6.0	3.0	5.0	96.0
09	2.0	36.0	2.0	70.0
10	98.0	8.0	0.0	4.0
11	23.0	2.0	4.0	81.0
12	1.0	102.0	5.0	2.0
13	109.0	1.0	0.0	0.0
14	48.0	8.0	39.0	15.0
15	10.0	75.0	3.0	22.0
16	20.0	15.0	17.0	58.0
17	95.0	4.0	8.0	3.0
18	28.0	9.0	67.0	6.0
19	63.0	0.0	24.0	23.0
20	15.0	3.0	86.0	6.0

PFM

	A	C	G	T
01	0.864	0.045	0.064	0.027
02	0.718	0.027	0.182	0.073
03	0.173	0.518	0.045	0.264
04	0.555	0.045	0.336	0.064
05	0.618	0.064	0.264	0.055
06	0.236	0.627	0.073	0.064
07	0.273	0.155	0.073	0.5
08	0.055	0.027	0.045	0.873
09	0.018	0.327	0.018	0.636
10	0.891	0.073	0.0	0.036
11	0.209	0.018	0.036	0.736
12	0.009	0.927	0.045	0.018
13	0.991	0.009	0.0	0.0
14	0.436	0.073	0.355	0.136
15	0.091	0.682	0.027	0.2
16	0.182	0.136	0.155	0.527
17	0.864	0.036	0.073	0.027
18	0.255	0.082	0.609	0.055
19	0.573	0.0	0.218	0.209
20	0.136	0.027	0.782	0.055

PWM

	A	C	G	T
01	1.21	-1.536	-1.255	-1.927
02	1.028	-1.927	-0.303	-1.14
03	-0.352	0.707	-1.536	0.051
04	0.774	-1.536	0.286	-1.255
05	0.881	-1.255	0.051	-1.385
06	-0.054	0.895	-1.14	-1.255
07	0.084	-0.456	-1.14	0.672
08	-1.385	-1.927	-1.536	1.22
09	-2.201	0.26	-2.201	0.909
10	1.241	-1.14	-3.195	-1.712
11	-0.171	-2.201	-1.712	1.053
12	-2.579	1.28	-1.536	-2.201
13	1.346	-2.579	-3.195	-3.195
14	0.539	-1.14	0.337	-0.573
15	-0.942	0.977	-1.927	-0.213
16	-0.303	-0.573	-0.456	0.724
17	1.21	-1.712	-1.14	-1.927
18	0.017	-1.036	0.866	-1.385
19	0.806	-3.195	-0.13	-0.171
20	-0.573	-1.927	1.112	-1.385

Standard thresholds

P-value	Threshold
0.001	3.22691
0.0005	4.28001
0.0001	6.51276