ZN614.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN614.H12INVIVO.0.P.C
Gene (human)	ZNF614 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	16
Consensus	dCWTbAYvKMATKRRn
GC content	39.18%
Information content (bits; total / per base)	11.378 / 0.711
Data sources	ChIP-Seq
Aligned words	282

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.79	0.79	0.725	0.725	0.794	0.794	4.577	4.577	42.066	42.066

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF350-like {2.3.3.30} (TFClass)
TFClass ID	TFClass: 2.3.3.30.5
HGNC	HGNC:24722
MGI
EntrezGene (human)	GeneID:80110 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN614_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N883 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN614.H12INVIVO.0.P.C.pcm
PWM	ZN614.H12INVIVO.0.P.C.pwm
PFM	ZN614.H12INVIVO.0.P.C.pfm
Alignment	ZN614.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN614.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN614.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN614.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN614.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN614.H12INVIVO.0.P.C_homer_format_0.001.txt ZN614.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN614.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	112.0	18.0	62.0	90.0
02	6.0	248.0	22.0	6.0
03	39.0	24.0	15.0	204.0
04	4.0	28.0	12.0	238.0
05	25.0	60.0	153.0	44.0
06	234.0	6.0	25.0	17.0
07	17.0	42.0	36.0	187.0
08	26.0	211.0	26.0	19.0
09	12.0	20.0	62.0	188.0
10	146.0	102.0	19.0	15.0
11	228.0	22.0	3.0	29.0
12	11.0	8.0	14.0	249.0
13	27.0	8.0	103.0	144.0
14	77.0	5.0	164.0	36.0
15	181.0	24.0	41.0	36.0
16	46.0	99.0	86.0	51.0

PFM

	A	C	G	T
01	0.397	0.064	0.22	0.319
02	0.021	0.879	0.078	0.021
03	0.138	0.085	0.053	0.723
04	0.014	0.099	0.043	0.844
05	0.089	0.213	0.543	0.156
06	0.83	0.021	0.089	0.06
07	0.06	0.149	0.128	0.663
08	0.092	0.748	0.092	0.067
09	0.043	0.071	0.22	0.667
10	0.518	0.362	0.067	0.053
11	0.809	0.078	0.011	0.103
12	0.039	0.028	0.05	0.883
13	0.096	0.028	0.365	0.511
14	0.273	0.018	0.582	0.128
15	0.642	0.085	0.145	0.128
16	0.163	0.351	0.305	0.181

PWM

	A	C	G	T
01	0.456	-1.31	-0.126	0.24
02	-2.273	1.244	-1.122	-2.273
03	-0.576	-1.04	-1.478	1.05
04	-2.587	-0.894	-1.679	1.203
05	-1.002	-0.158	0.764	-0.46
06	1.186	-2.273	-1.002	-1.363
07	-1.363	-0.505	-0.653	0.963
08	-0.964	1.083	-0.964	-1.259
09	-1.679	-1.212	-0.126	0.968
10	0.718	0.363	-1.259	-1.478
11	1.16	-1.122	-2.791	-0.861
12	-1.757	-2.034	-1.54	1.248
13	-0.929	-2.034	0.373	0.704
14	0.087	-2.417	0.833	-0.653
15	0.931	-1.04	-0.528	-0.653
16	-0.417	0.334	0.195	-0.316

Standard thresholds

P-value	Threshold
0.001	4.46786
0.0005	5.30561
0.0001	7.07431