ZN613.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN613.H12INVIVO.0.P.C
Gene (human)	ZNF613 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	25
Consensus	bChbhdKYTTTTWWWbYKbbhddbd
GC content	31.48%
Information content (bits; total / per base)	14.174 / 0.567
Data sources	ChIP-Seq
Aligned words	363

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.669	0.679	0.514	0.534	0.753	0.76	4.152	4.289	15.58	21.638

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF350-like {2.3.3.30} (TFClass)
TFClass ID	TFClass: 2.3.3.30.4
HGNC	HGNC:25827
MGI
EntrezGene (human)	GeneID:79898 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN613_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6PF04 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN613.H12INVIVO.0.P.C.pcm
PWM	ZN613.H12INVIVO.0.P.C.pwm
PFM	ZN613.H12INVIVO.0.P.C.pfm
Alignment	ZN613.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN613.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN613.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN613.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN613.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN613.H12INVIVO.0.P.C_homer_format_0.001.txt ZN613.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN613.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	35.0	101.0	165.0	62.0
02	5.0	297.0	30.0	31.0
03	89.0	103.0	8.0	163.0
04	58.0	61.0	109.0	135.0
05	108.0	69.0	39.0	147.0
06	93.0	33.0	36.0	201.0
07	36.0	32.0	78.0	217.0
08	27.0	86.0	21.0	229.0
09	5.0	2.0	20.0	336.0
10	3.0	37.0	19.0	304.0
11	12.0	12.0	2.0	337.0
12	5.0	12.0	15.0	331.0
13	53.0	22.0	30.0	258.0
14	39.0	19.0	21.0	284.0
15	124.0	30.0	24.0	185.0
16	42.0	63.0	66.0	192.0
17	23.0	80.0	29.0	231.0
18	45.0	30.0	63.0	225.0
19	31.0	33.0	139.0	160.0
20	38.0	115.0	79.0	131.0
21	65.0	124.0	9.0	165.0
22	99.0	37.0	46.0	181.0
23	46.0	21.0	141.0	155.0
24	45.0	69.0	50.0	199.0
25	84.0	35.0	95.0	149.0

PFM

	A	C	G	T
01	0.096	0.278	0.455	0.171
02	0.014	0.818	0.083	0.085
03	0.245	0.284	0.022	0.449
04	0.16	0.168	0.3	0.372
05	0.298	0.19	0.107	0.405
06	0.256	0.091	0.099	0.554
07	0.099	0.088	0.215	0.598
08	0.074	0.237	0.058	0.631
09	0.014	0.006	0.055	0.926
10	0.008	0.102	0.052	0.837
11	0.033	0.033	0.006	0.928
12	0.014	0.033	0.041	0.912
13	0.146	0.061	0.083	0.711
14	0.107	0.052	0.058	0.782
15	0.342	0.083	0.066	0.51
16	0.116	0.174	0.182	0.529
17	0.063	0.22	0.08	0.636
18	0.124	0.083	0.174	0.62
19	0.085	0.091	0.383	0.441
20	0.105	0.317	0.218	0.361
21	0.179	0.342	0.025	0.455
22	0.273	0.102	0.127	0.499
23	0.127	0.058	0.388	0.427
24	0.124	0.19	0.138	0.548
25	0.231	0.096	0.262	0.41

PWM

	A	C	G	T
01	-0.928	0.105	0.591	-0.374
02	-2.656	1.174	-1.075	-1.044
03	-0.019	0.125	-2.276	0.579
04	-0.439	-0.389	0.181	0.392
05	0.171	-0.269	-0.824	0.476
06	0.024	-0.984	-0.901	0.786
07	-0.901	-1.013	-0.149	0.862
08	-1.175	-0.053	-1.412	0.916
09	-2.656	-3.279	-1.457	1.297
10	-3.026	-0.874	-1.505	1.198
11	-1.923	-1.923	-3.279	1.3
12	-2.656	-1.923	-1.722	1.282
13	-0.526	-1.368	-1.075	1.034
14	-0.824	-1.505	-1.412	1.13
15	0.308	-1.075	-1.287	0.704
16	-0.752	-0.358	-0.312	0.741
17	-1.327	-0.124	-1.107	0.925
18	-0.685	-1.075	-0.358	0.898
19	-1.044	-0.984	0.421	0.56
20	-0.849	0.233	-0.136	0.362
21	-0.327	0.308	-2.175	0.591
22	0.086	-0.874	-0.664	0.682
23	-0.664	-1.412	0.435	0.529
24	-0.685	-0.269	-0.583	0.776
25	-0.076	-0.928	0.045	0.49

Standard thresholds

P-value	Threshold
0.001	3.77346
0.0005	4.74391
0.0001	6.79796