ZN611.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN611.H12RSNP.0.P.D
Gene (human)	ZNF611 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	vbGGAGMGCCYvhRvvSvSvbSb
GC content	68.19%
Information content (bits; total / per base)	15.961 / 0.694
Data sources	ChIP-Seq
Aligned words	291

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.874	0.9	0.721	0.782	0.956	0.974	11.882	12.577	163.367	178.721

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF813-like {2.3.3.72} (TFClass)
TFClass ID	TFClass: 2.3.3.72.3
HGNC	HGNC:28766
MGI
EntrezGene (human)	GeneID:81856 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN611_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N823 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN611.H12RSNP.0.P.D.pcm
PWM	ZN611.H12RSNP.0.P.D.pwm
PFM	ZN611.H12RSNP.0.P.D.pfm
Alignment	ZN611.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN611.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN611.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN611.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN611.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN611.H12RSNP.0.P.D_homer_format_0.001.txt ZN611.H12RSNP.0.P.D_homer_format_0.0005.txt ZN611.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	44.0	66.0	152.0	29.0
02	33.0	73.0	87.0	98.0
03	40.0	9.0	237.0	5.0
04	18.0	4.0	268.0	1.0
05	265.0	6.0	12.0	8.0
06	3.0	4.0	282.0	2.0
07	114.0	146.0	9.0	22.0
08	11.0	1.0	273.0	6.0
09	10.0	265.0	11.0	5.0
10	6.0	273.0	0.0	12.0
11	5.0	94.0	35.0	157.0
12	119.0	100.0	63.0	9.0
13	48.0	67.0	40.0	136.0
14	94.0	35.0	154.0	8.0
15	117.0	105.0	54.0	15.0
16	124.0	115.0	32.0	20.0
17	25.0	168.0	67.0	31.0
18	54.0	37.0	167.0	33.0
19	25.0	97.0	161.0	8.0
20	91.0	141.0	32.0	27.0
21	35.0	118.0	47.0	91.0
22	26.0	59.0	181.0	25.0
23	23.0	138.0	79.0	51.0

PFM

	A	C	G	T
01	0.151	0.227	0.522	0.1
02	0.113	0.251	0.299	0.337
03	0.137	0.031	0.814	0.017
04	0.062	0.014	0.921	0.003
05	0.911	0.021	0.041	0.027
06	0.01	0.014	0.969	0.007
07	0.392	0.502	0.031	0.076
08	0.038	0.003	0.938	0.021
09	0.034	0.911	0.038	0.017
10	0.021	0.938	0.0	0.041
11	0.017	0.323	0.12	0.54
12	0.409	0.344	0.216	0.031
13	0.165	0.23	0.137	0.467
14	0.323	0.12	0.529	0.027
15	0.402	0.361	0.186	0.052
16	0.426	0.395	0.11	0.069
17	0.086	0.577	0.23	0.107
18	0.186	0.127	0.574	0.113
19	0.086	0.333	0.553	0.027
20	0.313	0.485	0.11	0.093
21	0.12	0.405	0.162	0.313
22	0.089	0.203	0.622	0.086
23	0.079	0.474	0.271	0.175

PWM

	A	C	G	T
01	-0.49	-0.095	0.727	-0.891
02	-0.768	0.003	0.176	0.293
03	-0.583	-1.963	1.168	-2.447
04	-1.34	-2.617	1.29	-3.423
05	1.279	-2.302	-1.71	-2.064
06	-2.821	-2.617	1.341	-3.077
07	0.442	0.687	-1.963	-1.153
08	-1.787	-3.423	1.308	-2.302
09	-1.871	1.279	-1.787	-2.447
10	-2.302	1.308	-3.957	-1.71
11	-2.447	0.252	-0.711	0.759
12	0.485	0.313	-0.141	-1.963
13	-0.406	-0.081	-0.583	0.617
14	0.252	-0.711	0.74	-2.064
15	0.468	0.361	-0.291	-1.508
16	0.525	0.451	-0.797	-1.242
17	-1.032	0.826	-0.081	-0.828
18	-0.291	-0.658	0.82	-0.768
19	-1.032	0.283	0.784	-2.064
20	0.22	0.652	-0.797	-0.959
21	-0.711	0.476	-0.426	0.22
22	-0.995	-0.205	0.9	-1.032
23	-1.111	0.631	0.081	-0.347

Standard thresholds

P-value	Threshold
0.001	3.07566
0.0005	4.17176
0.0001	6.48676