ZN611.H12INVIVO.1.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN611.H12INVIVO.1.P.C
Gene (human)	ZNF611 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	25
Consensus	TCTGGGAWGTGAGGAGCGCCTCTGC
GC content	63.52%
Information content (bits; total / per base)	42.431 / 1.697
Data sources	ChIP-Seq
Aligned words	806

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.816	0.829	0.676	0.719	0.88	0.919	18.176	19.628	59.877	65.854

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF813-like {2.3.3.72} (TFClass)
TFClass ID	TFClass: 2.3.3.72.3
HGNC	HGNC:28766
MGI
EntrezGene (human)	GeneID:81856 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN611_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N823 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN611.H12INVIVO.1.P.C.pcm
PWM	ZN611.H12INVIVO.1.P.C.pwm
PFM	ZN611.H12INVIVO.1.P.C.pfm
Alignment	ZN611.H12INVIVO.1.P.C.words.tsv
Threshold to P-value map	ZN611.H12INVIVO.1.P.C.thr
Motif in other formats
JASPAR format	ZN611.H12INVIVO.1.P.C_jaspar_format.txt
MEME format	ZN611.H12INVIVO.1.P.C_meme_format.meme
Transfac format	ZN611.H12INVIVO.1.P.C_transfac_format.txt
Homer format	ZN611.H12INVIVO.1.P.C_homer_format_0.001.txt ZN611.H12INVIVO.1.P.C_homer_format_0.0005.txt ZN611.H12INVIVO.1.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	9.0	12.0	8.0	777.0
02	5.0	793.0	5.0	3.0
03	2.0	8.0	4.0	792.0
04	14.0	8.0	778.0	6.0
05	27.0	6.0	766.0	7.0
06	9.0	9.0	785.0	3.0
07	788.0	4.0	10.0	4.0
08	293.0	3.0	151.0	359.0
09	19.0	12.0	774.0	1.0
10	7.0	9.0	10.0	780.0
11	10.0	3.0	791.0	2.0
12	737.0	3.0	55.0	11.0
13	8.0	2.0	795.0	1.0
14	8.0	4.0	793.0	1.0
15	793.0	3.0	4.0	6.0
16	3.0	2.0	798.0	3.0
17	13.0	699.0	4.0	90.0
18	51.0	16.0	735.0	4.0
19	2.0	709.0	3.0	92.0
20	0.0	800.0	3.0	3.0
21	4.0	10.0	2.0	790.0
22	1.0	791.0	8.0	6.0
23	2.0	21.0	5.0	778.0
24	3.0	3.0	793.0	7.0
25	5.0	786.0	4.0	11.0

PFM

	A	C	G	T
01	0.011	0.015	0.01	0.964
02	0.006	0.984	0.006	0.004
03	0.002	0.01	0.005	0.983
04	0.017	0.01	0.965	0.007
05	0.033	0.007	0.95	0.009
06	0.011	0.011	0.974	0.004
07	0.978	0.005	0.012	0.005
08	0.364	0.004	0.187	0.445
09	0.024	0.015	0.96	0.001
10	0.009	0.011	0.012	0.968
11	0.012	0.004	0.981	0.002
12	0.914	0.004	0.068	0.014
13	0.01	0.002	0.986	0.001
14	0.01	0.005	0.984	0.001
15	0.984	0.004	0.005	0.007
16	0.004	0.002	0.99	0.004
17	0.016	0.867	0.005	0.112
18	0.063	0.02	0.912	0.005
19	0.002	0.88	0.004	0.114
20	0.0	0.993	0.004	0.004
21	0.005	0.012	0.002	0.98
22	0.001	0.981	0.01	0.007
23	0.002	0.026	0.006	0.965
24	0.004	0.004	0.984	0.009
25	0.006	0.975	0.005	0.014

PWM

	A	C	G	T
01	-2.946	-2.699	-3.045	1.344
02	-3.416	1.364	-3.416	-3.772
03	-4.013	-3.045	-3.578	1.363
04	-2.562	-3.045	1.345	-3.276
05	-1.958	-3.276	1.329	-3.154
06	-2.946	-2.946	1.354	-3.772
07	1.358	-3.578	-2.857	-3.578
08	0.372	-3.772	-0.286	0.574
09	-2.285	-2.699	1.34	-4.331
10	-3.154	-2.946	-2.857	1.347
11	-2.857	-3.772	1.361	-4.013
12	1.291	-3.772	-1.277	-2.775
13	-3.045	-4.013	1.366	-4.331
14	-3.045	-3.578	1.364	-4.331
15	1.364	-3.772	-3.578	-3.276
16	-3.772	-4.013	1.37	-3.772
17	-2.628	1.238	-3.578	-0.796
18	-1.35	-2.442	1.288	-3.578
19	-4.013	1.252	-3.772	-0.774
20	-4.799	1.373	-3.772	-3.772
21	-3.578	-2.857	-4.013	1.36
22	-4.331	1.361	-3.045	-3.276
23	-4.013	-2.193	-3.416	1.345
24	-3.772	-3.772	1.364	-3.154
25	-3.416	1.355	-3.578	-2.775

Standard thresholds

P-value	Threshold
0.001	-17.47834
0.0005	-15.20289
0.0001	-10.30954