ZN610.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN610.H12INVITRO.1.P.D
Gene (human)	ZNF610 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	23
Consensus	vbYbvShGCCRCTCCYYMYbvYY
GC content	59.84%
Information content (bits; total / per base)	17.341 / 0.754
Data sources	ChIP-Seq
Aligned words	999

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.863	0.978	0.814	0.97	0.893	0.966	6.794	14.168	176.921	315.796

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.89
HGNC	HGNC:26687
MGI
EntrezGene (human)	GeneID:162963 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN610_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N9Z0 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN610.H12INVITRO.1.P.D.pcm
PWM	ZN610.H12INVITRO.1.P.D.pwm
PFM	ZN610.H12INVITRO.1.P.D.pfm
Alignment	ZN610.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	ZN610.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	ZN610.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	ZN610.H12INVITRO.1.P.D_meme_format.meme
Transfac format	ZN610.H12INVITRO.1.P.D_transfac_format.txt
Homer format	ZN610.H12INVITRO.1.P.D_homer_format_0.001.txt ZN610.H12INVITRO.1.P.D_homer_format_0.0005.txt ZN610.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	506.0	224.0	142.0	127.0
02	72.0	199.0	161.0	567.0
03	59.0	250.0	95.0	595.0
04	67.0	229.0	135.0	568.0
05	480.0	243.0	161.0	115.0
06	46.0	734.0	112.0	107.0
07	573.0	203.0	68.0	155.0
08	49.0	50.0	840.0	60.0
09	20.0	897.0	32.0	50.0
10	22.0	778.0	25.0	174.0
11	249.0	69.0	638.0	43.0
12	4.0	974.0	10.0	11.0
13	13.0	19.0	25.0	942.0
14	7.0	925.0	44.0	23.0
15	31.0	840.0	32.0	96.0
16	21.0	672.0	77.0	229.0
17	36.0	714.0	70.0	179.0
18	583.0	237.0	93.0	86.0
19	93.0	209.0	82.0	615.0
20	65.0	360.0	190.0	384.0
21	126.0	258.0	534.0	81.0
22	39.0	733.0	49.0	178.0
23	76.0	198.0	120.0	605.0

PFM

	A	C	G	T
01	0.507	0.224	0.142	0.127
02	0.072	0.199	0.161	0.568
03	0.059	0.25	0.095	0.596
04	0.067	0.229	0.135	0.569
05	0.48	0.243	0.161	0.115
06	0.046	0.735	0.112	0.107
07	0.574	0.203	0.068	0.155
08	0.049	0.05	0.841	0.06
09	0.02	0.898	0.032	0.05
10	0.022	0.779	0.025	0.174
11	0.249	0.069	0.639	0.043
12	0.004	0.975	0.01	0.011
13	0.013	0.019	0.025	0.943
14	0.007	0.926	0.044	0.023
15	0.031	0.841	0.032	0.096
16	0.021	0.673	0.077	0.229
17	0.036	0.715	0.07	0.179
18	0.584	0.237	0.093	0.086
19	0.093	0.209	0.082	0.616
20	0.065	0.36	0.19	0.384
21	0.126	0.258	0.535	0.081
22	0.039	0.734	0.049	0.178
23	0.076	0.198	0.12	0.606

PWM

	A	C	G	T
01	0.703	-0.108	-0.559	-0.67
02	-1.227	-0.225	-0.435	0.816
03	-1.421	0.001	-0.955	0.864
04	-1.297	-0.086	-0.609	0.818
05	0.65	-0.027	-0.435	-0.768
06	-1.662	1.074	-0.794	-0.839
07	0.827	-0.206	-1.283	-0.473
08	-1.601	-1.581	1.208	-1.405
09	-2.449	1.274	-2.009	-1.581
10	-2.361	1.132	-2.242	-0.358
11	-0.003	-1.269	0.934	-1.727
12	-3.782	1.356	-3.065	-2.984
13	-2.838	-2.496	-2.242	1.322
14	-3.361	1.304	-1.705	-2.319
15	-2.039	1.208	-2.009	-0.945
16	-2.404	0.985	-1.161	-0.086
17	-1.897	1.046	-1.254	-0.33
18	0.844	-0.052	-0.976	-1.053
19	-0.976	-0.177	-1.1	0.897
20	-1.327	0.364	-0.271	0.428
21	-0.677	0.032	0.756	-1.112
22	-1.82	1.072	-1.601	-0.336
23	-1.174	-0.23	-0.726	0.881

Standard thresholds

P-value	Threshold
0.001	2.54856
0.0005	3.67761
0.0001	6.07846