ZN610.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN610.H12INVITRO.0.P.D
Gene (human)	ZNF610 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	14
Consensus	SvGCCGCTCCYbvb
GC content	73.63%
Information content (bits; total / per base)	14.927 / 1.066
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.926	0.988	0.864	0.979	0.904	0.966	4.427	5.827	318.638	401.456

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.89
HGNC	HGNC:26687
MGI
EntrezGene (human)	GeneID:162963 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN610_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N9Z0 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN610.H12INVITRO.0.P.D.pcm
PWM	ZN610.H12INVITRO.0.P.D.pwm
PFM	ZN610.H12INVITRO.0.P.D.pfm
Alignment	ZN610.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN610.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN610.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN610.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN610.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN610.H12INVITRO.0.P.D_homer_format_0.001.txt ZN610.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN610.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	50.0	625.0	223.0	102.0
02	371.0	353.0	146.0	130.0
03	44.0	19.0	911.0	26.0
04	25.0	930.0	32.0	13.0
05	7.0	911.0	3.0	79.0
06	93.0	7.0	893.0	7.0
07	0.0	998.0	0.0	2.0
08	1.0	2.0	4.0	993.0
09	2.0	995.0	1.0	2.0
10	32.0	814.0	43.0	111.0
11	22.0	547.0	158.0	273.0
12	54.0	612.0	167.0	167.0
13	416.0	328.0	157.0	99.0
14	105.0	320.0	109.0	466.0

PFM

	A	C	G	T
01	0.05	0.625	0.223	0.102
02	0.371	0.353	0.146	0.13
03	0.044	0.019	0.911	0.026
04	0.025	0.93	0.032	0.013
05	0.007	0.911	0.003	0.079
06	0.093	0.007	0.893	0.007
07	0.0	0.998	0.0	0.002
08	0.001	0.002	0.004	0.993
09	0.002	0.995	0.001	0.002
10	0.032	0.814	0.043	0.111
11	0.022	0.547	0.158	0.273
12	0.054	0.612	0.167	0.167
13	0.416	0.328	0.157	0.099
14	0.105	0.32	0.109	0.466

PWM

	A	C	G	T
01	-1.582	0.912	-0.113	-0.887
02	0.393	0.343	-0.533	-0.648
03	-1.706	-2.497	1.288	-2.206
04	-2.243	1.309	-2.01	-2.839
05	-3.362	1.288	-3.975	-1.137
06	-0.977	-3.362	1.268	-3.362
07	-4.982	1.379	-4.982	-4.213
08	-4.525	-4.213	-3.783	1.374
09	-4.213	1.376	-4.525	-4.213
10	-2.01	1.176	-1.728	-0.803
11	-2.362	0.779	-0.455	0.087
12	-1.508	0.891	-0.4	-0.4
13	0.506	0.27	-0.461	-0.916
14	-0.858	0.245	-0.821	0.62

Standard thresholds

P-value	Threshold
0.001	2.76366
0.0005	4.01451
0.0001	6.58816