ZN605.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN605.H12INVITRO.0.P.D
Gene (human)	ZNF605 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	YYWRWYYdTGGYYTCTAWhhMCM
GC content	44.91%
Information content (bits; total / per base)	17.329 / 0.753
Data sources	ChIP-Seq
Aligned words	1004

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.845	0.862	0.837	0.856	0.851	0.872	8.53	8.979	278.93	319.149

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF300-like {2.3.3.71} (TFClass)
TFClass ID	TFClass: 2.3.3.71.2
HGNC	HGNC:28068
MGI
EntrezGene (human)	GeneID:100289635 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN605_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q86T29 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN605.H12INVITRO.0.P.D.pcm
PWM	ZN605.H12INVITRO.0.P.D.pwm
PFM	ZN605.H12INVITRO.0.P.D.pfm
Alignment	ZN605.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN605.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN605.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN605.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN605.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN605.H12INVITRO.0.P.D_homer_format_0.001.txt ZN605.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN605.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	103.0	599.0	106.0	196.0
02	100.0	630.0	104.0	170.0
03	647.0	88.0	134.0	135.0
04	148.0	147.0	637.0	72.0
05	691.0	109.0	83.0	121.0
06	85.0	237.0	94.0	588.0
07	71.0	452.0	54.0	427.0
08	242.0	52.0	152.0	558.0
09	13.0	37.0	128.0	826.0
10	43.0	27.0	903.0	31.0
11	47.0	26.0	857.0	74.0
12	21.0	243.0	50.0	690.0
13	48.0	266.0	122.0	568.0
14	21.0	128.0	58.0	797.0
15	7.0	933.0	8.0	56.0
16	23.0	32.0	10.0	939.0
17	817.0	56.0	70.0	61.0
18	700.0	126.0	32.0	146.0
19	498.0	157.0	132.0	217.0
20	251.0	159.0	111.0	483.0
21	491.0	371.0	80.0	62.0
22	20.0	816.0	23.0	145.0
23	172.0	712.0	20.0	100.0

PFM

	A	C	G	T
01	0.103	0.597	0.106	0.195
02	0.1	0.627	0.104	0.169
03	0.644	0.088	0.133	0.134
04	0.147	0.146	0.634	0.072
05	0.688	0.109	0.083	0.121
06	0.085	0.236	0.094	0.586
07	0.071	0.45	0.054	0.425
08	0.241	0.052	0.151	0.556
09	0.013	0.037	0.127	0.823
10	0.043	0.027	0.899	0.031
11	0.047	0.026	0.854	0.074
12	0.021	0.242	0.05	0.687
13	0.048	0.265	0.122	0.566
14	0.021	0.127	0.058	0.794
15	0.007	0.929	0.008	0.056
16	0.023	0.032	0.01	0.935
17	0.814	0.056	0.07	0.061
18	0.697	0.125	0.032	0.145
19	0.496	0.156	0.131	0.216
20	0.25	0.158	0.111	0.481
21	0.489	0.37	0.08	0.062
22	0.02	0.813	0.023	0.144
23	0.171	0.709	0.02	0.1

PWM

	A	C	G	T
01	-0.881	0.866	-0.853	-0.245
02	-0.91	0.916	-0.871	-0.386
03	0.943	-1.036	-0.622	-0.614
04	-0.523	-0.53	0.927	-1.232
05	1.008	-0.825	-1.093	-0.722
06	-1.07	-0.057	-0.971	0.847
07	-1.246	0.585	-1.512	0.529
08	-0.036	-1.548	-0.497	0.795
09	-2.843	-1.876	-0.667	1.186
10	-1.732	-2.174	1.275	-2.044
11	-1.646	-2.21	1.223	-1.205
12	-2.409	-0.032	-1.586	1.007
13	-1.626	0.058	-0.714	0.813
14	-2.409	-0.667	-1.443	1.151
15	-3.366	1.308	-3.257	-1.477
16	-2.324	-2.014	-3.07	1.314
17	1.175	-1.477	-1.259	-1.394
18	1.021	-0.682	-2.014	-0.537
19	0.682	-0.465	-0.637	-0.144
20	0.0	-0.453	-0.807	0.651
21	0.668	0.389	-1.129	-1.378
22	-2.454	1.174	-2.324	-0.544
23	-0.375	1.038	-2.454	-0.91

Standard thresholds

P-value	Threshold
0.001	2.64106
0.0005	3.74706
0.0001	6.10441