ZN595.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN595.H12RSNP.0.P.D
Gene (human)	ZNF595 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	MTGKWAbRGRWTKRAAWCAYYbK
GC content	38.08%
Information content (bits; total / per base)	19.499 / 0.848
Data sources	ChIP-Seq
Aligned words	278

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.605	0.655	0.551	0.626	0.688	0.74	5.525	7.129	47.77	61.538

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF595-like {2.3.3.77} (TFClass)
TFClass ID	TFClass: 2.3.3.77.1
HGNC	HGNC:27196
MGI
EntrezGene (human)	GeneID:152687 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN595_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8IYB9 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN595.H12RSNP.0.P.D.pcm
PWM	ZN595.H12RSNP.0.P.D.pwm
PFM	ZN595.H12RSNP.0.P.D.pfm
Alignment	ZN595.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN595.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN595.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN595.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN595.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN595.H12RSNP.0.P.D_homer_format_0.001.txt ZN595.H12RSNP.0.P.D_homer_format_0.0005.txt ZN595.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	218.0	29.0	20.0	11.0
02	9.0	18.0	9.0	242.0
03	38.0	1.0	233.0	6.0
04	10.0	35.0	97.0	136.0
05	93.0	13.0	9.0	163.0
06	221.0	10.0	39.0	8.0
07	28.0	35.0	165.0	50.0
08	175.0	34.0	53.0	16.0
09	9.0	4.0	261.0	4.0
10	81.0	7.0	166.0	24.0
11	72.0	35.0	12.0	159.0
12	7.0	19.0	9.0	243.0
13	8.0	24.0	72.0	174.0
14	158.0	19.0	94.0	7.0
15	258.0	5.0	11.0	4.0
16	251.0	11.0	12.0	4.0
17	166.0	17.0	30.0	65.0
18	9.0	235.0	26.0	8.0
19	236.0	20.0	10.0	12.0
20	34.0	186.0	10.0	48.0
21	20.0	59.0	10.0	189.0
22	29.0	44.0	43.0	162.0
23	21.0	18.0	166.0	73.0

PFM

	A	C	G	T
01	0.784	0.104	0.072	0.04
02	0.032	0.065	0.032	0.871
03	0.137	0.004	0.838	0.022
04	0.036	0.126	0.349	0.489
05	0.335	0.047	0.032	0.586
06	0.795	0.036	0.14	0.029
07	0.101	0.126	0.594	0.18
08	0.629	0.122	0.191	0.058
09	0.032	0.014	0.939	0.014
10	0.291	0.025	0.597	0.086
11	0.259	0.126	0.043	0.572
12	0.025	0.068	0.032	0.874
13	0.029	0.086	0.259	0.626
14	0.568	0.068	0.338	0.025
15	0.928	0.018	0.04	0.014
16	0.903	0.04	0.043	0.014
17	0.597	0.061	0.108	0.234
18	0.032	0.845	0.094	0.029
19	0.849	0.072	0.036	0.043
20	0.122	0.669	0.036	0.173
21	0.072	0.212	0.036	0.68
22	0.104	0.158	0.155	0.583
23	0.076	0.065	0.597	0.263

PWM

	A	C	G	T
01	1.13	-0.847	-1.198	-1.743
02	-1.919	-1.296	-1.919	1.233
03	-0.587	-3.383	1.196	-2.259
04	-1.827	-0.667	0.328	0.662
05	0.286	-1.594	-1.919	0.841
06	1.143	-1.827	-0.562	-2.02
07	-0.88	-0.667	0.853	-0.322
08	0.911	-0.694	-0.265	-1.405
09	-1.919	-2.574	1.309	-2.574
10	0.15	-2.132	0.859	-1.026
11	0.035	-0.667	-1.666	0.816
12	-2.132	-1.245	-1.919	1.237
13	-2.02	-1.026	0.035	0.906
14	0.81	-1.245	0.297	-2.132
15	1.297	-2.404	-1.743	-2.574
16	1.27	-1.743	-1.666	-2.574
17	0.859	-1.349	-0.814	-0.066
18	-1.919	1.204	-0.951	-2.02
19	1.208	-1.198	-1.827	-1.666
20	-0.694	0.972	-1.827	-0.361
21	-1.198	-0.16	-1.827	0.988
22	-0.847	-0.446	-0.468	0.835
23	-1.152	-1.296	0.859	0.048

Standard thresholds

P-value	Threshold
0.001	2.02721
0.0005	3.18986
0.0001	5.67631