ZN587.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN587.H12RSNP.0.P.D
Gene (human)	ZNF587 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	hdnbKKGCGCCCAMYRYKRKbMh
GC content	61.24%
Information content (bits; total / per base)	17.887 / 0.778
Data sources	ChIP-Seq
Aligned words	429

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.948	0.977	0.94	0.965	0.939	0.978	7.778	8.628	244.009	256.921

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Multiple dispersed zinc fingers {2.3.4} (TFClass)
TF subfamily	ZNF417-like {2.3.4.1} (TFClass)
TFClass ID	TFClass: 2.3.4.1.2
HGNC	HGNC:30955
MGI
EntrezGene (human)	GeneID:84914 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN587_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96SQ5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN587.H12RSNP.0.P.D.pcm
PWM	ZN587.H12RSNP.0.P.D.pwm
PFM	ZN587.H12RSNP.0.P.D.pfm
Alignment	ZN587.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN587.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN587.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN587.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN587.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN587.H12RSNP.0.P.D_homer_format_0.001.txt ZN587.H12RSNP.0.P.D_homer_format_0.0005.txt ZN587.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	82.0	209.0	48.0	90.0
02	233.0	44.0	53.0	99.0
03	90.0	63.0	117.0	159.0
04	42.0	162.0	123.0	102.0
05	19.0	30.0	50.0	330.0
06	46.0	8.0	304.0	71.0
07	17.0	37.0	362.0	13.0
08	10.0	380.0	5.0	34.0
09	66.0	2.0	350.0	11.0
10	2.0	423.0	2.0	2.0
11	0.0	415.0	1.0	13.0
12	28.0	375.0	16.0	10.0
13	398.0	9.0	10.0	12.0
14	311.0	70.0	36.0	12.0
15	24.0	332.0	29.0	44.0
16	252.0	35.0	116.0	26.0
17	26.0	72.0	34.0	297.0
18	17.0	53.0	233.0	126.0
19	48.0	22.0	323.0	36.0
20	48.0	42.0	261.0	78.0
21	53.0	65.0	192.0	119.0
22	56.0	285.0	45.0	43.0
23	96.0	153.0	47.0	133.0

PFM

	A	C	G	T
01	0.191	0.487	0.112	0.21
02	0.543	0.103	0.124	0.231
03	0.21	0.147	0.273	0.371
04	0.098	0.378	0.287	0.238
05	0.044	0.07	0.117	0.769
06	0.107	0.019	0.709	0.166
07	0.04	0.086	0.844	0.03
08	0.023	0.886	0.012	0.079
09	0.154	0.005	0.816	0.026
10	0.005	0.986	0.005	0.005
11	0.0	0.967	0.002	0.03
12	0.065	0.874	0.037	0.023
13	0.928	0.021	0.023	0.028
14	0.725	0.163	0.084	0.028
15	0.056	0.774	0.068	0.103
16	0.587	0.082	0.27	0.061
17	0.061	0.168	0.079	0.692
18	0.04	0.124	0.543	0.294
19	0.112	0.051	0.753	0.084
20	0.112	0.098	0.608	0.182
21	0.124	0.152	0.448	0.277
22	0.131	0.664	0.105	0.1
23	0.224	0.357	0.11	0.31

PWM

	A	C	G	T
01	-0.264	0.66	-0.787	-0.173
02	0.768	-0.871	-0.691	-0.079
03	-0.173	-0.522	0.086	0.389
04	-0.916	0.408	0.135	-0.049
05	-1.668	-1.239	-0.747	1.114
06	-0.828	-2.436	1.033	-0.405
07	-1.771	-1.038	1.207	-2.014
08	-2.246	1.255	-2.815	-1.119
09	-0.477	-3.432	1.173	-2.162
10	-3.432	1.362	-3.432	-3.432
11	-4.274	1.343	-3.767	-2.014
12	-1.304	1.242	-1.826	-2.246
13	1.301	-2.336	-2.246	-2.085
14	1.055	-0.419	-1.064	-2.085
15	-1.45	1.12	-1.271	-0.871
16	0.846	-1.091	0.077	-1.374
17	-1.374	-0.392	-1.119	1.01
18	-1.771	-0.691	0.768	0.159
19	-0.787	-1.532	1.093	-1.064
20	-0.787	-0.916	0.881	-0.313
21	-0.691	-0.492	0.576	0.103
22	-0.637	0.969	-0.849	-0.893
23	-0.109	0.351	-0.807	0.212

Standard thresholds

P-value	Threshold
0.001	2.38766
0.0005	3.54531
0.0001	6.00021