ZN584.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN584.H12INVITRO.1.P.D
Gene (human)	ZNF584 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	14
Consensus	hRTTTCAAAAhWGY
GC content	29.39%
Information content (bits; total / per base)	15.013 / 1.072
Data sources	ChIP-Seq
Aligned words	79

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.536	0.972	0.429	0.954	0.544	0.98	1.65	6.038	10.013	128.432

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.67
HGNC	HGNC:27318
MGI
EntrezGene (human)	GeneID:201514 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN584_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8IVC4 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN584.H12INVITRO.1.P.D.pcm
PWM	ZN584.H12INVITRO.1.P.D.pwm
PFM	ZN584.H12INVITRO.1.P.D.pfm
Alignment	ZN584.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	ZN584.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	ZN584.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	ZN584.H12INVITRO.1.P.D_meme_format.meme
Transfac format	ZN584.H12INVITRO.1.P.D_transfac_format.txt
Homer format	ZN584.H12INVITRO.1.P.D_homer_format_0.001.txt ZN584.H12INVITRO.1.P.D_homer_format_0.0005.txt ZN584.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	40.0	16.0	8.0	15.0
02	49.0	6.0	20.0	4.0
03	4.0	4.0	0.0	71.0
04	2.0	0.0	2.0	75.0
05	0.0	2.0	0.0	77.0
06	7.0	62.0	1.0	9.0
07	64.0	9.0	4.0	2.0
08	67.0	1.0	8.0	3.0
09	73.0	4.0	1.0	1.0
10	62.0	4.0	1.0	12.0
11	28.0	27.0	3.0	21.0
12	11.0	3.0	5.0	60.0
13	6.0	2.0	71.0	0.0
14	2.0	59.0	2.0	16.0

PFM

	A	C	G	T
01	0.506	0.203	0.101	0.19
02	0.62	0.076	0.253	0.051
03	0.051	0.051	0.0	0.899
04	0.025	0.0	0.025	0.949
05	0.0	0.025	0.0	0.975
06	0.089	0.785	0.013	0.114
07	0.81	0.114	0.051	0.025
08	0.848	0.013	0.101	0.038
09	0.924	0.051	0.013	0.013
10	0.785	0.051	0.013	0.152
11	0.354	0.342	0.038	0.266
12	0.139	0.038	0.063	0.759
13	0.076	0.025	0.899	0.0
14	0.025	0.747	0.025	0.203

PWM

	A	C	G	T
01	0.679	-0.198	-0.83	-0.259
02	0.877	-1.078	0.012	-1.409
03	-1.409	-1.409	-2.949	1.241
04	-1.908	-2.949	-1.908	1.295
05	-2.949	-1.908	-2.949	1.321
06	-0.946	1.108	-2.299	-0.725
07	1.139	-0.725	-1.409	-1.908
08	1.184	-2.299	-0.83	-1.628
09	1.268	-1.409	-2.299	-2.299
10	1.108	-1.409	-2.299	-0.465
11	0.333	0.299	-1.628	0.058
12	-0.544	-1.628	-1.23	1.075
13	-1.078	-1.908	1.241	-2.949
14	-1.908	1.059	-1.908	-0.198

Standard thresholds

P-value	Threshold
0.001	3.83456
0.0005	4.81281
0.0001	6.878065