ZN584.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN584.H12INVITRO.0.P.D
Gene (human)	ZNF584 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	23
Consensus	ATTTCARAAYTGCTWWGGRYMAv
GC content	36.32%
Information content (bits; total / per base)	25.167 / 1.094
Data sources	ChIP-Seq
Aligned words	391

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (11)	0.538	0.992	0.461	0.989	0.552	0.994	3.067	15.06	39.854	175.658

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.67
HGNC	HGNC:27318
MGI
EntrezGene (human)	GeneID:201514 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN584_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8IVC4 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN584.H12INVITRO.0.P.D.pcm
PWM	ZN584.H12INVITRO.0.P.D.pwm
PFM	ZN584.H12INVITRO.0.P.D.pfm
Alignment	ZN584.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN584.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN584.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN584.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN584.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN584.H12INVITRO.0.P.D_homer_format_0.001.txt ZN584.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN584.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	317.0	24.0	38.0	12.0
02	17.0	6.0	3.0	365.0
03	5.0	2.0	4.0	380.0
04	5.0	6.0	6.0	374.0
05	33.0	322.0	8.0	28.0
06	326.0	34.0	24.0	7.0
07	197.0	4.0	166.0	24.0
08	361.0	10.0	15.0	5.0
09	353.0	3.0	2.0	33.0
10	54.0	69.0	14.0	254.0
11	18.0	10.0	16.0	347.0
12	34.0	6.0	344.0	7.0
13	7.0	307.0	1.0	76.0
14	19.0	25.0	12.0	335.0
15	270.0	19.0	40.0	62.0
16	57.0	16.0	18.0	300.0
17	1.0	2.0	385.0	3.0
18	63.0	2.0	312.0	14.0
19	232.0	19.0	112.0	28.0
20	51.0	252.0	17.0	71.0
21	60.0	276.0	11.0	44.0
22	322.0	19.0	31.0	19.0
23	97.0	53.0	201.0	40.0

PFM

	A	C	G	T
01	0.811	0.061	0.097	0.031
02	0.043	0.015	0.008	0.934
03	0.013	0.005	0.01	0.972
04	0.013	0.015	0.015	0.957
05	0.084	0.824	0.02	0.072
06	0.834	0.087	0.061	0.018
07	0.504	0.01	0.425	0.061
08	0.923	0.026	0.038	0.013
09	0.903	0.008	0.005	0.084
10	0.138	0.176	0.036	0.65
11	0.046	0.026	0.041	0.887
12	0.087	0.015	0.88	0.018
13	0.018	0.785	0.003	0.194
14	0.049	0.064	0.031	0.857
15	0.691	0.049	0.102	0.159
16	0.146	0.041	0.046	0.767
17	0.003	0.005	0.985	0.008
18	0.161	0.005	0.798	0.036
19	0.593	0.049	0.286	0.072
20	0.13	0.645	0.043	0.182
21	0.153	0.706	0.028	0.113
22	0.824	0.049	0.079	0.049
23	0.248	0.136	0.514	0.102

PWM

	A	C	G	T
01	1.166	-1.359	-0.921	-1.995
02	-1.68	-2.584	-3.095	1.306
03	-2.727	-3.347	-2.894	1.347
04	-2.727	-2.584	-2.584	1.331
05	-1.057	1.182	-2.347	-1.213
06	1.194	-1.028	-1.359	-2.458
07	0.693	-2.894	0.523	-1.359
08	1.295	-2.156	-1.795	-2.727
09	1.273	-3.095	-3.347	-1.057
10	-0.581	-0.342	-1.857	0.946
11	-1.628	-2.156	-1.736	1.256
12	-1.028	-2.584	1.247	-2.458
13	-2.458	1.134	-3.684	-0.247
14	-1.578	-1.321	-1.995	1.221
15	1.006	-1.578	-0.872	-0.447
16	-0.529	-1.736	-1.628	1.111
17	-3.684	-3.347	1.36	-3.095
18	-0.431	-3.347	1.15	-1.857
19	0.856	-1.578	0.134	-1.213
20	-0.637	0.938	-1.68	-0.314
21	-0.479	1.028	-2.072	-0.78
22	1.182	-1.578	-1.117	-1.578
23	-0.008	-0.6	0.713	-0.872

Standard thresholds

P-value	Threshold
0.001	-1.04924
0.0005	0.38161
0.0001	3.44641