MotifZN580.H12INVIVO.0.SM.D
Gene (human)ZNF580
(GeneCards)
Gene synonyms (human)
Gene (mouse)Znf580
Gene synonyms (mouse)Zfp580
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length10
ConsensusnvCTACChYn
GC content55.06%
Information content (bits; total / per base)11.357 / 1.136
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words8973

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.935 0.9 0.888 0.848 0.789 0.765
best 0.942 0.909 0.899 0.861 0.808 0.782
Methyl HT-SELEX, 1 experiments median 0.942 0.909 0.899 0.861 0.808 0.782
best 0.942 0.909 0.899 0.861 0.808 0.782
Non-Methyl HT-SELEX, 1 experiments median 0.929 0.89 0.876 0.835 0.769 0.749
best 0.929 0.89 0.876 0.835 0.769 0.749
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyOther with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamilyOther {2.3.2.4} (TFClass)
TFClass IDTFClass: 2.3.2.4.3
HGNCHGNC:29473
MGIMGI:1916242
EntrezGene (human)GeneID:51157
(SSTAR profile)
EntrezGene (mouse)GeneID:68992
(SSTAR profile)
UniProt ID (human)ZN580_HUMAN
UniProt ID (mouse)ZN580_MOUSE
UniProt AC (human)Q9UK33
(TFClass)
UniProt AC (mouse)Q9DB38
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
012666.252663.251477.252166.25
022163.04512.01927.0371.0
0315.08941.00.017.0
040.00.00.08973.0
058973.00.00.00.0
060.08973.00.00.0
070.08973.00.00.0
081184.04734.0681.02374.0
09966.01779.0252.05976.0
102044.752803.751685.752438.75
PFM
ACGT
010.2970.2970.1650.241
020.2410.5030.2150.041
030.0020.9960.00.002
040.00.00.01.0
051.00.00.00.0
060.01.00.00.0
070.01.00.00.0
080.1320.5280.0760.265
090.1080.1980.0280.666
100.2280.3120.1880.272
PWM
ACGT
010.1730.171-0.417-0.035
02-0.0360.698-0.152-1.794
03-4.8671.382-6.894-4.758
04-6.894-6.894-6.8941.386
051.386-6.894-6.894-6.894
06-6.8941.386-6.894-6.894
07-6.8941.386-6.894-6.894
08-0.6380.746-1.190.057
09-0.841-0.232-2.1780.979
10-0.0930.223-0.2850.083
Standard thresholds
P-value Threshold
0.001 2.5958
0.0005 5.698995
0.0001 7.839735