ZN580.H12INVIVO.0.SM.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN580.H12INVIVO.0.SM.D
Gene (human)	ZNF580 (GeneCards)
Gene synonyms (human)
Gene (mouse)	Znf580
Gene synonyms (mouse)	Zfp580
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	10
Consensus	nvCTACChYn
GC content	55.06%
Information content (bits; total / per base)	11.357 / 1.136
Data sources	HT-SELEX + Methyl-HT-SELEX
Aligned words	8973

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.935	0.9	0.888	0.848	0.789	0.765
Overall, 2 experiments	best	0.942	0.909	0.899	0.861	0.808	0.782
Methyl HT-SELEX, 1 experiments	median	0.942	0.909	0.899	0.861	0.808	0.782
Methyl HT-SELEX, 1 experiments	best	0.942	0.909	0.899	0.861	0.808	0.782
Non-Methyl HT-SELEX, 1 experiments	median	0.929	0.89	0.876	0.835	0.769	0.749
Non-Methyl HT-SELEX, 1 experiments	best	0.929	0.89	0.876	0.835	0.769	0.749

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	Other with up to three adjacent zinc fingers {2.3.2} (TFClass)
TF subfamily	Other {2.3.2.4} (TFClass)
TFClass ID	TFClass: 2.3.2.4.3
HGNC	HGNC:29473
MGI	MGI:1916242
EntrezGene (human)	GeneID:51157 (SSTAR profile)
EntrezGene (mouse)	GeneID:68992 (SSTAR profile)
UniProt ID (human)	ZN580_HUMAN
UniProt ID (mouse)	ZN580_MOUSE
UniProt AC (human)	Q9UK33 (TFClass)
UniProt AC (mouse)	Q9DB38 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	0 human, 0 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	ZN580.H12INVIVO.0.SM.D.pcm
PWM	ZN580.H12INVIVO.0.SM.D.pwm
PFM	ZN580.H12INVIVO.0.SM.D.pfm
Alignment	ZN580.H12INVIVO.0.SM.D.words.tsv
Threshold to P-value map	ZN580.H12INVIVO.0.SM.D.thr
Motif in other formats
JASPAR format	ZN580.H12INVIVO.0.SM.D_jaspar_format.txt
MEME format	ZN580.H12INVIVO.0.SM.D_meme_format.meme
Transfac format	ZN580.H12INVIVO.0.SM.D_transfac_format.txt
Homer format	ZN580.H12INVIVO.0.SM.D_homer_format_0.001.txt ZN580.H12INVIVO.0.SM.D_homer_format_0.0005.txt ZN580.H12INVIVO.0.SM.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2666.25	2663.25	1477.25	2166.25
02	2163.0	4512.0	1927.0	371.0
03	15.0	8941.0	0.0	17.0
04	0.0	0.0	0.0	8973.0
05	8973.0	0.0	0.0	0.0
06	0.0	8973.0	0.0	0.0
07	0.0	8973.0	0.0	0.0
08	1184.0	4734.0	681.0	2374.0
09	966.0	1779.0	252.0	5976.0
10	2044.75	2803.75	1685.75	2438.75

PFM

	A	C	G	T
01	0.297	0.297	0.165	0.241
02	0.241	0.503	0.215	0.041
03	0.002	0.996	0.0	0.002
04	0.0	0.0	0.0	1.0
05	1.0	0.0	0.0	0.0
06	0.0	1.0	0.0	0.0
07	0.0	1.0	0.0	0.0
08	0.132	0.528	0.076	0.265
09	0.108	0.198	0.028	0.666
10	0.228	0.312	0.188	0.272

PWM

	A	C	G	T
01	0.173	0.171	-0.417	-0.035
02	-0.036	0.698	-0.152	-1.794
03	-4.867	1.382	-6.894	-4.758
04	-6.894	-6.894	-6.894	1.386
05	1.386	-6.894	-6.894	-6.894
06	-6.894	1.386	-6.894	-6.894
07	-6.894	1.386	-6.894	-6.894
08	-0.638	0.746	-1.19	0.057
09	-0.841	-0.232	-2.178	0.979
10	-0.093	0.223	-0.285	0.083

Standard thresholds

P-value	Threshold
0.001	2.5958
0.0005	5.698995
0.0001	7.839735