ZN578.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN578.H12INVIVO.0.P.C
Gene (human)	ZNF578 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	24
Consensus	GAGGATGTATGTYGCCTCAGGACC
GC content	55.75%
Information content (bits; total / per base)	38.058 / 1.586
Data sources	ChIP-Seq
Aligned words	284

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (3)	0.716	0.716	0.713	0.713	0.697	0.697	10.607	10.607	145.569	145.569

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.135
HGNC	HGNC:26449
MGI
EntrezGene (human)	GeneID:147660 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN578_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96N58 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN578.H12INVIVO.0.P.C.pcm
PWM	ZN578.H12INVIVO.0.P.C.pwm
PFM	ZN578.H12INVIVO.0.P.C.pfm
Alignment	ZN578.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN578.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN578.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN578.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN578.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN578.H12INVIVO.0.P.C_homer_format_0.001.txt ZN578.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN578.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	2.0	4.0	277.0	1.0
02	278.0	0.0	5.0	1.0
03	11.0	1.0	272.0	0.0
04	8.0	0.0	274.0	2.0
05	264.0	4.0	12.0	4.0
06	8.0	1.0	6.0	269.0
07	3.0	4.0	265.0	12.0
08	14.0	14.0	5.0	251.0
09	264.0	10.0	7.0	3.0
10	12.0	29.0	8.0	235.0
11	29.0	1.0	246.0	8.0
12	2.0	18.0	3.0	261.0
13	25.0	216.0	5.0	38.0
14	99.0	0.0	183.0	2.0
15	1.0	281.0	2.0	0.0
16	0.0	233.0	0.0	51.0
17	1.0	1.0	4.0	278.0
18	0.0	282.0	2.0	0.0
19	275.0	3.0	3.0	3.0
20	5.0	5.0	274.0	0.0
21	6.0	4.0	273.0	1.0
22	274.0	1.0	5.0	4.0
23	2.0	279.0	2.0	1.0
24	4.0	275.0	1.0	4.0

PFM

	A	C	G	T
01	0.007	0.014	0.975	0.004
02	0.979	0.0	0.018	0.004
03	0.039	0.004	0.958	0.0
04	0.028	0.0	0.965	0.007
05	0.93	0.014	0.042	0.014
06	0.028	0.004	0.021	0.947
07	0.011	0.014	0.933	0.042
08	0.049	0.049	0.018	0.884
09	0.93	0.035	0.025	0.011
10	0.042	0.102	0.028	0.827
11	0.102	0.004	0.866	0.028
12	0.007	0.063	0.011	0.919
13	0.088	0.761	0.018	0.134
14	0.349	0.0	0.644	0.007
15	0.004	0.989	0.007	0.0
16	0.0	0.82	0.0	0.18
17	0.004	0.004	0.014	0.979
18	0.0	0.993	0.007	0.0
19	0.968	0.011	0.011	0.011
20	0.018	0.018	0.965	0.0
21	0.021	0.014	0.961	0.004
22	0.965	0.004	0.018	0.014
23	0.007	0.982	0.007	0.004
24	0.014	0.968	0.004	0.014

PWM

	A	C	G	T
01	-3.055	-2.594	1.347	-3.402
02	1.35	-3.937	-2.424	-3.402
03	-1.764	-3.402	1.329	-3.937
04	-2.04	-3.937	1.336	-3.055
05	1.299	-2.594	-1.686	-2.594
06	-2.04	-3.402	-2.279	1.318
07	-2.798	-2.594	1.303	-1.686
08	-1.547	-1.547	-2.424	1.249
09	1.299	-1.848	-2.153	-2.798
10	-1.686	-0.868	-2.04	1.183
11	-0.868	-3.402	1.229	-2.04
12	-3.055	-1.316	-2.798	1.288
13	-1.009	1.099	-2.424	-0.608
14	0.327	-3.937	0.935	-3.055
15	-3.402	1.361	-3.055	-3.937
16	-3.937	1.175	-3.937	-0.323
17	-3.402	-3.402	-2.594	1.35
18	-3.937	1.365	-3.055	-3.937
19	1.34	-2.798	-2.798	-2.798
20	-2.424	-2.424	1.336	-3.937
21	-2.279	-2.594	1.332	-3.402
22	1.336	-3.402	-2.424	-2.594
23	-3.055	1.354	-3.055	-3.402
24	-2.594	1.34	-3.402	-2.594

Standard thresholds

P-value	Threshold
0.001	-10.46099
0.0005	-8.51074
0.0001	-4.30634