MotifZN578.H12INVIVO.0.P.C
Gene (human)ZNF578
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length24
ConsensusGAGGATGTATGTYGCCTCAGGACC
GC content55.75%
Information content (bits; total / per base)38.058 / 1.586
Data sourcesChIP-Seq
Aligned words284

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (3) 0.716 0.716 0.713 0.713 0.697 0.697 10.607 10.607 145.569 145.569
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyUnclassified {2.3.3.0} (TFClass)
TFClass IDTFClass: 2.3.3.0.135
HGNCHGNC:26449
MGI
EntrezGene (human)GeneID:147660
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN578_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q96N58
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
012.04.0277.01.0
02278.00.05.01.0
0311.01.0272.00.0
048.00.0274.02.0
05264.04.012.04.0
068.01.06.0269.0
073.04.0265.012.0
0814.014.05.0251.0
09264.010.07.03.0
1012.029.08.0235.0
1129.01.0246.08.0
122.018.03.0261.0
1325.0216.05.038.0
1499.00.0183.02.0
151.0281.02.00.0
160.0233.00.051.0
171.01.04.0278.0
180.0282.02.00.0
19275.03.03.03.0
205.05.0274.00.0
216.04.0273.01.0
22274.01.05.04.0
232.0279.02.01.0
244.0275.01.04.0
PFM
ACGT
010.0070.0140.9750.004
020.9790.00.0180.004
030.0390.0040.9580.0
040.0280.00.9650.007
050.930.0140.0420.014
060.0280.0040.0210.947
070.0110.0140.9330.042
080.0490.0490.0180.884
090.930.0350.0250.011
100.0420.1020.0280.827
110.1020.0040.8660.028
120.0070.0630.0110.919
130.0880.7610.0180.134
140.3490.00.6440.007
150.0040.9890.0070.0
160.00.820.00.18
170.0040.0040.0140.979
180.00.9930.0070.0
190.9680.0110.0110.011
200.0180.0180.9650.0
210.0210.0140.9610.004
220.9650.0040.0180.014
230.0070.9820.0070.004
240.0140.9680.0040.014
PWM
ACGT
01-3.055-2.5941.347-3.402
021.35-3.937-2.424-3.402
03-1.764-3.4021.329-3.937
04-2.04-3.9371.336-3.055
051.299-2.594-1.686-2.594
06-2.04-3.402-2.2791.318
07-2.798-2.5941.303-1.686
08-1.547-1.547-2.4241.249
091.299-1.848-2.153-2.798
10-1.686-0.868-2.041.183
11-0.868-3.4021.229-2.04
12-3.055-1.316-2.7981.288
13-1.0091.099-2.424-0.608
140.327-3.9370.935-3.055
15-3.4021.361-3.055-3.937
16-3.9371.175-3.937-0.323
17-3.402-3.402-2.5941.35
18-3.9371.365-3.055-3.937
191.34-2.798-2.798-2.798
20-2.424-2.4241.336-3.937
21-2.279-2.5941.332-3.402
221.336-3.402-2.424-2.594
23-3.0551.354-3.055-3.402
24-2.5941.34-3.402-2.594
Standard thresholds
P-value Threshold
0.001 -10.46099
0.0005 -8.51074
0.0001 -4.30634