ZN577.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN577.H12RSNP.0.P.D
Gene (human)	ZNF577 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	19
Consensus	dMvvvvCYYCTTRAGShSY
GC content	59.81%
Information content (bits; total / per base)	16.297 / 0.858
Data sources	ChIP-Seq
Aligned words	280

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	2 (9)	0.666	0.873	0.646	0.881	0.636	0.872	3.025	5.716	125.367	408.824

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF350-like {2.3.3.30} (TFClass)
TFClass ID	TFClass: 2.3.3.30.2
HGNC	HGNC:28673
MGI
EntrezGene (human)	GeneID:84765 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN577_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q9BSK1 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	2 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN577.H12RSNP.0.P.D.pcm
PWM	ZN577.H12RSNP.0.P.D.pwm
PFM	ZN577.H12RSNP.0.P.D.pfm
Alignment	ZN577.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN577.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN577.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN577.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN577.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN577.H12RSNP.0.P.D_homer_format_0.001.txt ZN577.H12RSNP.0.P.D_homer_format_0.0005.txt ZN577.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	62.0	31.0	149.0	38.0
02	44.0	169.0	38.0	29.0
03	126.0	89.0	34.0	31.0
04	105.0	42.0	111.0	22.0
05	73.0	59.0	110.0	38.0
06	81.0	53.0	119.0	27.0
07	14.0	245.0	10.0	11.0
08	44.0	186.0	1.0	49.0
09	8.0	150.0	6.0	116.0
10	1.0	278.0	1.0	0.0
11	7.0	11.0	0.0	262.0
12	10.0	21.0	7.0	242.0
13	88.0	5.0	186.0	1.0
14	275.0	0.0	3.0	2.0
15	1.0	0.0	279.0	0.0
16	1.0	133.0	145.0	1.0
17	79.0	136.0	18.0	47.0
18	9.0	212.0	38.0	21.0
19	19.0	92.0	15.0	154.0

PFM

	A	C	G	T
01	0.221	0.111	0.532	0.136
02	0.157	0.604	0.136	0.104
03	0.45	0.318	0.121	0.111
04	0.375	0.15	0.396	0.079
05	0.261	0.211	0.393	0.136
06	0.289	0.189	0.425	0.096
07	0.05	0.875	0.036	0.039
08	0.157	0.664	0.004	0.175
09	0.029	0.536	0.021	0.414
10	0.004	0.993	0.004	0.0
11	0.025	0.039	0.0	0.936
12	0.036	0.075	0.025	0.864
13	0.314	0.018	0.664	0.004
14	0.982	0.0	0.011	0.007
15	0.004	0.0	0.996	0.0
16	0.004	0.475	0.518	0.004
17	0.282	0.486	0.064	0.168
18	0.032	0.757	0.136	0.075
19	0.068	0.329	0.054	0.55

PWM

	A	C	G	T
01	-0.119	-0.79	0.745	-0.594
02	-0.453	0.87	-0.594	-0.854
03	0.579	0.236	-0.701	-0.79
04	0.399	-0.498	0.454	-1.115
05	0.041	-0.167	0.445	-0.594
06	0.143	-0.272	0.522	-0.922
07	-1.533	1.239	-1.834	-1.75
08	-0.453	0.965	-3.389	-0.348
09	-2.027	0.752	-2.266	0.497
10	-3.389	1.364	-3.389	-3.926
11	-2.139	-1.75	-3.926	1.305
12	-1.834	-1.159	-2.139	1.226
13	0.225	-2.411	0.965	-3.389
14	1.353	-3.926	-2.785	-3.042
15	-3.389	-3.926	1.368	-3.926
16	-3.389	0.632	0.718	-3.389
17	0.119	0.655	-1.303	-0.389
18	-1.926	1.095	-0.594	-1.159
19	-1.252	0.269	-1.471	0.778

Standard thresholds

P-value	Threshold
0.001	2.68806
0.0005	3.88831
0.0001	6.39581