ZN573.H12INVIVO.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN573.H12INVIVO.0.P.C
Gene (human)	ZNF573 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	24
Consensus	YMAGhMhdGGYMCAMnMMdSRvhv
GC content	53.96%
Information content (bits; total / per base)	16.44 / 0.685
Data sources	ChIP-Seq
Aligned words	1005

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.962	0.973	0.951	0.964	0.964	0.973	6.976	7.172	518.612	567.62

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF283-like {2.3.3.67} (TFClass)
TFClass ID	TFClass: 2.3.3.67.8
HGNC	HGNC:26420
MGI
EntrezGene (human)	GeneID:126231 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN573_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q86YE8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN573.H12INVIVO.0.P.C.pcm
PWM	ZN573.H12INVIVO.0.P.C.pwm
PFM	ZN573.H12INVIVO.0.P.C.pfm
Alignment	ZN573.H12INVIVO.0.P.C.words.tsv
Threshold to P-value map	ZN573.H12INVIVO.0.P.C.thr
Motif in other formats
JASPAR format	ZN573.H12INVIVO.0.P.C_jaspar_format.txt
MEME format	ZN573.H12INVIVO.0.P.C_meme_format.meme
Transfac format	ZN573.H12INVIVO.0.P.C_transfac_format.txt
Homer format	ZN573.H12INVIVO.0.P.C_homer_format_0.001.txt ZN573.H12INVIVO.0.P.C_homer_format_0.0005.txt ZN573.H12INVIVO.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	98.0	175.0	118.0	614.0
02	212.0	619.0	75.0	99.0
03	818.0	28.0	120.0	39.0
04	46.0	50.0	846.0	63.0
05	183.0	459.0	90.0	273.0
06	239.0	627.0	53.0	86.0
07	581.0	165.0	112.0	147.0
08	348.0	90.0	355.0	212.0
09	104.0	1.0	900.0	0.0
10	13.0	2.0	988.0	2.0
11	174.0	547.0	8.0	276.0
12	612.0	377.0	13.0	3.0
13	10.0	908.0	22.0	65.0
14	944.0	48.0	6.0	7.0
15	367.0	543.0	91.0	4.0
16	303.0	256.0	135.0	311.0
17	313.0	567.0	90.0	35.0
18	792.0	88.0	75.0	50.0
19	259.0	42.0	530.0	174.0
20	47.0	145.0	676.0	137.0
21	602.0	115.0	190.0	98.0
22	134.0	186.0	555.0	130.0
23	483.0	254.0	115.0	153.0
24	301.0	377.0	183.0	144.0

PFM

	A	C	G	T
01	0.098	0.174	0.117	0.611
02	0.211	0.616	0.075	0.099
03	0.814	0.028	0.119	0.039
04	0.046	0.05	0.842	0.063
05	0.182	0.457	0.09	0.272
06	0.238	0.624	0.053	0.086
07	0.578	0.164	0.111	0.146
08	0.346	0.09	0.353	0.211
09	0.103	0.001	0.896	0.0
10	0.013	0.002	0.983	0.002
11	0.173	0.544	0.008	0.275
12	0.609	0.375	0.013	0.003
13	0.01	0.903	0.022	0.065
14	0.939	0.048	0.006	0.007
15	0.365	0.54	0.091	0.004
16	0.301	0.255	0.134	0.309
17	0.311	0.564	0.09	0.035
18	0.788	0.088	0.075	0.05
19	0.258	0.042	0.527	0.173
20	0.047	0.144	0.673	0.136
21	0.599	0.114	0.189	0.098
22	0.133	0.185	0.552	0.129
23	0.481	0.253	0.114	0.152
24	0.3	0.375	0.182	0.143

PWM

	A	C	G	T
01	-0.931	-0.359	-0.748	0.89
02	-0.169	0.898	-1.193	-0.921
03	1.176	-2.141	-0.732	-1.826
04	-1.668	-1.587	1.209	-1.363
05	-0.314	0.6	-1.014	0.082
06	-0.05	0.91	-1.531	-1.059
07	0.834	-0.417	-0.799	-0.531
08	0.324	-1.014	0.344	-0.169
09	-0.872	-4.53	1.271	-4.986
10	-2.844	-4.217	1.364	-4.217
11	-0.364	0.774	-3.258	0.093
12	0.886	0.404	-2.844	-3.98
13	-3.071	1.28	-2.367	-1.333
14	1.319	-1.627	-3.488	-3.367
15	0.377	0.767	-1.004	-3.788
16	0.186	0.019	-0.615	0.212
17	0.218	0.81	-1.014	-1.93
18	1.143	-1.037	-1.193	-1.587
19	0.03	-1.755	0.743	-0.364
20	-1.647	-0.545	0.985	-0.601
21	0.87	-0.773	-0.277	-0.931
22	-0.623	-0.298	0.789	-0.653
23	0.65	0.011	-0.773	-0.492
24	0.18	0.404	-0.314	-0.552

Standard thresholds

P-value	Threshold
0.001	2.68446
0.0005	3.84966
0.0001	6.28726