ZN570.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN570.H12RSNP.0.P.D
Gene (human)	ZNF570 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	19
Consensus	WGAhAWMWYnMMAGAAAAY
GC content	26.99%
Information content (bits; total / per base)	20.531 / 1.081
Data sources	ChIP-Seq
Aligned words	125

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.962	0.962	0.94	0.94	0.971	0.971	6.974	6.974	58.114	58.114

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF642-like {2.3.3.31} (TFClass)
TFClass ID	TFClass: 2.3.3.31.3
HGNC	HGNC:26416
MGI
EntrezGene (human)	GeneID:148268 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN570_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q96NI8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN570.H12RSNP.0.P.D.pcm
PWM	ZN570.H12RSNP.0.P.D.pwm
PFM	ZN570.H12RSNP.0.P.D.pfm
Alignment	ZN570.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN570.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN570.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN570.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN570.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN570.H12RSNP.0.P.D_homer_format_0.001.txt ZN570.H12RSNP.0.P.D_homer_format_0.0005.txt ZN570.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	95.0	7.0	2.0	21.0
02	23.0	0.0	102.0	0.0
03	122.0	3.0	0.0	0.0
04	29.0	26.0	5.0	65.0
05	112.0	10.0	2.0	1.0
06	23.0	8.0	8.0	86.0
07	82.0	25.0	11.0	7.0
08	86.0	9.0	14.0	16.0
09	13.0	33.0	5.0	74.0
10	64.0	21.0	20.0	20.0
11	33.0	76.0	8.0	8.0
12	93.0	19.0	0.0	13.0
13	102.0	2.0	7.0	14.0
14	0.0	0.0	125.0	0.0
15	125.0	0.0	0.0	0.0
16	118.0	6.0	1.0	0.0
17	124.0	0.0	1.0	0.0
18	110.0	3.0	10.0	2.0
19	0.0	55.0	17.0	53.0

PFM

	A	C	G	T
01	0.76	0.056	0.016	0.168
02	0.184	0.0	0.816	0.0
03	0.976	0.024	0.0	0.0
04	0.232	0.208	0.04	0.52
05	0.896	0.08	0.016	0.008
06	0.184	0.064	0.064	0.688
07	0.656	0.2	0.088	0.056
08	0.688	0.072	0.112	0.128
09	0.104	0.264	0.04	0.592
10	0.512	0.168	0.16	0.16
11	0.264	0.608	0.064	0.064
12	0.744	0.152	0.0	0.104
13	0.816	0.016	0.056	0.112
14	0.0	0.0	1.0	0.0
15	1.0	0.0	0.0	0.0
16	0.944	0.048	0.008	0.0
17	0.992	0.0	0.008	0.0
18	0.88	0.024	0.08	0.016
19	0.0	0.44	0.136	0.424

PWM

	A	C	G	T
01	1.087	-1.375	-2.315	-0.38
02	-0.293	-3.292	1.157	-3.292
03	1.334	-2.043	-3.292	-3.292
04	-0.072	-0.176	-1.654	0.713
05	1.249	-1.063	-2.315	-2.688
06	-0.293	-1.26	-1.26	0.988
07	0.941	-0.214	-0.978	-1.375
08	0.988	-1.157	-0.758	-0.635
09	-0.826	0.053	-1.654	0.84
10	0.698	-0.38	-0.426	-0.426
11	0.053	0.867	-1.26	-1.26
12	1.066	-0.474	-3.292	-0.826
13	1.157	-2.315	-1.375	-0.758
14	-3.292	-3.292	1.358	-3.292
15	1.358	-3.292	-3.292	-3.292
16	1.301	-1.505	-2.688	-3.292
17	1.35	-3.292	-2.688	-3.292
18	1.231	-2.043	-1.063	-2.315
19	-3.292	0.549	-0.578	0.513

Standard thresholds

P-value	Threshold
0.001	1.42276
0.0005	2.71306
0.0001	5.44726