ZN567.H12CORE.0.P.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN567.H12CORE.0.P.C
Gene (human)	ZNF567 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	C

Motif length	30
Consensus	AWhMddYMRYARAAvYAGAYMYWvRRRWRv
GC content	39.77%
Information content (bits; total / per base)	22.978 / 0.766
Data sources	ChIP-Seq
Aligned words	1002

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.947	0.953	0.935	0.94	0.963	0.972	11.094	11.186	503.364	539.149

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF25-like {2.3.3.69} (TFClass)
TFClass ID	TFClass: 2.3.3.69.4
HGNC	HGNC:28696
MGI
EntrezGene (human)	GeneID:163081 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN567_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N184 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN567.H12CORE.0.P.C.pcm
PWM	ZN567.H12CORE.0.P.C.pwm
PFM	ZN567.H12CORE.0.P.C.pfm
Alignment	ZN567.H12CORE.0.P.C.words.tsv
Threshold to P-value map	ZN567.H12CORE.0.P.C.thr
Motif in other formats
JASPAR format	ZN567.H12CORE.0.P.C_jaspar_format.txt
MEME format	ZN567.H12CORE.0.P.C_meme_format.meme
Transfac format	ZN567.H12CORE.0.P.C_transfac_format.txt
Homer format	ZN567.H12CORE.0.P.C_homer_format_0.001.txt ZN567.H12CORE.0.P.C_homer_format_0.0005.txt ZN567.H12CORE.0.P.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	809.0	43.0	91.0	59.0
02	612.0	91.0	146.0	153.0
03	161.0	568.0	94.0	179.0
04	774.0	96.0	74.0	58.0
05	338.0	74.0	494.0	96.0
06	262.0	121.0	134.0	485.0
07	147.0	632.0	71.0	152.0
08	708.0	129.0	70.0	95.0
09	683.0	103.0	119.0	97.0
10	89.0	275.0	41.0	597.0
11	908.0	26.0	26.0	42.0
12	277.0	86.0	579.0	60.0
13	961.0	2.0	34.0	5.0
14	940.0	13.0	28.0	21.0
15	436.0	129.0	384.0	53.0
16	125.0	575.0	39.0	263.0
17	907.0	9.0	31.0	55.0
18	38.0	12.0	939.0	13.0
19	861.0	4.0	133.0	4.0
20	59.0	761.0	32.0	150.0
21	157.0	680.0	32.0	133.0
22	122.0	686.0	26.0	168.0
23	587.0	115.0	63.0	237.0
24	158.0	305.0	419.0	120.0
25	792.0	56.0	115.0	39.0
26	292.0	30.0	593.0	87.0
27	724.0	49.0	178.0	51.0
28	105.0	50.0	96.0	751.0
29	151.0	43.0	732.0	76.0
30	529.0	247.0	131.0	95.0

PFM

	A	C	G	T
01	0.807	0.043	0.091	0.059
02	0.611	0.091	0.146	0.153
03	0.161	0.567	0.094	0.179
04	0.772	0.096	0.074	0.058
05	0.337	0.074	0.493	0.096
06	0.261	0.121	0.134	0.484
07	0.147	0.631	0.071	0.152
08	0.707	0.129	0.07	0.095
09	0.682	0.103	0.119	0.097
10	0.089	0.274	0.041	0.596
11	0.906	0.026	0.026	0.042
12	0.276	0.086	0.578	0.06
13	0.959	0.002	0.034	0.005
14	0.938	0.013	0.028	0.021
15	0.435	0.129	0.383	0.053
16	0.125	0.574	0.039	0.262
17	0.905	0.009	0.031	0.055
18	0.038	0.012	0.937	0.013
19	0.859	0.004	0.133	0.004
20	0.059	0.759	0.032	0.15
21	0.157	0.679	0.032	0.133
22	0.122	0.685	0.026	0.168
23	0.586	0.115	0.063	0.237
24	0.158	0.304	0.418	0.12
25	0.79	0.056	0.115	0.039
26	0.291	0.03	0.592	0.087
27	0.723	0.049	0.178	0.051
28	0.105	0.05	0.096	0.75
29	0.151	0.043	0.731	0.076
30	0.528	0.247	0.131	0.095

PWM

	A	C	G	T
01	1.168	-1.73	-1.001	-1.424
02	0.889	-1.001	-0.535	-0.489
03	-0.438	0.815	-0.969	-0.333
04	1.123	-0.948	-1.203	-1.441
05	0.298	-1.203	0.676	-0.948
06	0.045	-0.72	-0.62	0.657
07	-0.528	0.921	-1.244	-0.495
08	1.035	-0.657	-1.257	-0.958
09	0.999	-0.879	-0.737	-0.938
10	-1.022	0.093	-1.775	0.864
11	1.283	-2.208	-2.208	-1.752
12	0.1	-1.056	0.834	-1.408
13	1.339	-4.215	-1.954	-3.624
14	1.317	-2.841	-2.138	-2.407
15	0.551	-0.657	0.425	-1.528
16	-0.688	0.827	-1.823	0.048
17	1.282	-3.158	-2.042	-1.492
18	-1.848	-2.911	1.316	-2.841
19	1.23	-3.785	-0.627	-3.785
20	-1.424	1.107	-2.012	-0.508
21	-0.463	0.994	-2.012	-0.627
22	-0.712	1.003	-2.208	-0.396
23	0.848	-0.77	-1.36	-0.055
24	-0.457	0.196	0.512	-0.729
25	1.146	-1.475	-0.77	-1.823
26	0.152	-2.073	0.858	-1.045
27	1.057	-1.604	-0.339	-1.565
28	-0.86	-1.584	-0.948	1.093
29	-0.502	-1.73	1.068	-1.177
30	0.744	-0.014	-0.642	-0.958

Standard thresholds

P-value	Threshold
0.001	0.31881
0.0005	1.62841
0.0001	4.43086