ZN566.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN566.H12INVITRO.0.P.D
Gene (human)	ZNF566 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	25
Consensus	bRGCKGSAMGGGARSCdRRvMRddb
GC content	61.12%
Information content (bits; total / per base)	20.119 / 0.805
Data sources	ChIP-Seq
Aligned words	288

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.904	0.925	0.878	0.898	0.92	0.945	9.8	10.092	120.854	137.854

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF620-like {2.3.3.35} (TFClass)
TFClass ID	TFClass: 2.3.3.35.3
HGNC	HGNC:25919
MGI
EntrezGene (human)	GeneID:84924 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN566_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q969W8 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN566.H12INVITRO.0.P.D.pcm
PWM	ZN566.H12INVITRO.0.P.D.pwm
PFM	ZN566.H12INVITRO.0.P.D.pfm
Alignment	ZN566.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN566.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN566.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN566.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN566.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN566.H12INVITRO.0.P.D_homer_format_0.001.txt ZN566.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN566.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	31.0	36.0	60.0	161.0
02	204.0	26.0	41.0	17.0
03	2.0	11.0	272.0	3.0
04	7.0	261.0	20.0	0.0
05	23.0	14.0	73.0	178.0
06	3.0	22.0	251.0	12.0
07	24.0	198.0	42.0	24.0
08	248.0	3.0	32.0	5.0
09	212.0	40.0	33.0	3.0
10	54.0	6.0	228.0	0.0
11	50.0	3.0	222.0	13.0
12	5.0	4.0	272.0	7.0
13	254.0	27.0	4.0	3.0
14	36.0	13.0	221.0	18.0
15	7.0	55.0	174.0	52.0
16	7.0	252.0	24.0	5.0
17	59.0	35.0	63.0	131.0
18	45.0	16.0	212.0	15.0
19	40.0	24.0	212.0	12.0
20	61.0	51.0	161.0	15.0
21	176.0	65.0	39.0	8.0
22	159.0	52.0	67.0	10.0
23	113.0	47.0	79.0	49.0
24	43.0	42.0	102.0	101.0
25	44.0	55.0	139.0	50.0

PFM

	A	C	G	T
01	0.108	0.125	0.208	0.559
02	0.708	0.09	0.142	0.059
03	0.007	0.038	0.944	0.01
04	0.024	0.906	0.069	0.0
05	0.08	0.049	0.253	0.618
06	0.01	0.076	0.872	0.042
07	0.083	0.688	0.146	0.083
08	0.861	0.01	0.111	0.017
09	0.736	0.139	0.115	0.01
10	0.188	0.021	0.792	0.0
11	0.174	0.01	0.771	0.045
12	0.017	0.014	0.944	0.024
13	0.882	0.094	0.014	0.01
14	0.125	0.045	0.767	0.063
15	0.024	0.191	0.604	0.181
16	0.024	0.875	0.083	0.017
17	0.205	0.122	0.219	0.455
18	0.156	0.056	0.736	0.052
19	0.139	0.083	0.736	0.042
20	0.212	0.177	0.559	0.052
21	0.611	0.226	0.135	0.028
22	0.552	0.181	0.233	0.035
23	0.392	0.163	0.274	0.17
24	0.149	0.146	0.354	0.351
25	0.153	0.191	0.483	0.174

PWM

	A	C	G	T
01	-0.817	-0.674	-0.178	0.794
02	1.029	-0.985	-0.549	-1.383
03	-3.068	-1.777	1.315	-2.811
04	-2.166	1.274	-1.232	-3.948
05	-1.101	-1.561	0.014	0.894
06	-2.811	-1.143	1.235	-1.7
07	-1.061	0.999	-0.525	-1.061
08	1.223	-2.811	-0.787	-2.437
09	1.067	-0.572	-0.758	-2.811
10	-0.281	-2.293	1.139	-3.948
11	-0.356	-2.811	1.113	-1.628
12	-2.437	-2.607	1.315	-2.166
13	1.247	-0.949	-2.607	-2.811
14	-0.674	-1.628	1.108	-1.33
15	-2.166	-0.263	0.871	-0.318
16	-2.166	1.239	-1.061	-2.437
17	-0.195	-0.701	-0.131	0.59
18	-0.458	-1.439	1.067	-1.498
19	-0.572	-1.061	1.067	-1.7
20	-0.162	-0.337	0.794	-1.498
21	0.882	-0.1	-0.597	-2.054
22	0.782	-0.318	-0.071	-1.861
23	0.444	-0.416	0.091	-0.376
24	-0.503	-0.525	0.343	0.333
25	-0.48	-0.263	0.648	-0.356

Standard thresholds

P-value	Threshold
0.001	1.66541
0.0005	2.87971
0.0001	5.46756