MotifZN566.H12CORE.0.P.C
Gene (human)ZNF566
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length25
ConsensusbRGCKGSAMGGGARSCdRRvMRddb
GC content61.12%
Information content (bits; total / per base)20.119 / 0.805
Data sourcesChIP-Seq
Aligned words288

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.904 0.925 0.878 0.898 0.92 0.945 9.8 10.092 120.854 137.854
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF620-like {2.3.3.35} (TFClass)
TFClass IDTFClass: 2.3.3.35.3
HGNCHGNC:25919
MGI
EntrezGene (human)GeneID:84924
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN566_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q969W8
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0131.036.060.0161.0
02204.026.041.017.0
032.011.0272.03.0
047.0261.020.00.0
0523.014.073.0178.0
063.022.0251.012.0
0724.0198.042.024.0
08248.03.032.05.0
09212.040.033.03.0
1054.06.0228.00.0
1150.03.0222.013.0
125.04.0272.07.0
13254.027.04.03.0
1436.013.0221.018.0
157.055.0174.052.0
167.0252.024.05.0
1759.035.063.0131.0
1845.016.0212.015.0
1940.024.0212.012.0
2061.051.0161.015.0
21176.065.039.08.0
22159.052.067.010.0
23113.047.079.049.0
2443.042.0102.0101.0
2544.055.0139.050.0
PFM
ACGT
010.1080.1250.2080.559
020.7080.090.1420.059
030.0070.0380.9440.01
040.0240.9060.0690.0
050.080.0490.2530.618
060.010.0760.8720.042
070.0830.6880.1460.083
080.8610.010.1110.017
090.7360.1390.1150.01
100.1880.0210.7920.0
110.1740.010.7710.045
120.0170.0140.9440.024
130.8820.0940.0140.01
140.1250.0450.7670.063
150.0240.1910.6040.181
160.0240.8750.0830.017
170.2050.1220.2190.455
180.1560.0560.7360.052
190.1390.0830.7360.042
200.2120.1770.5590.052
210.6110.2260.1350.028
220.5520.1810.2330.035
230.3920.1630.2740.17
240.1490.1460.3540.351
250.1530.1910.4830.174
PWM
ACGT
01-0.817-0.674-0.1780.794
021.029-0.985-0.549-1.383
03-3.068-1.7771.315-2.811
04-2.1661.274-1.232-3.948
05-1.101-1.5610.0140.894
06-2.811-1.1431.235-1.7
07-1.0610.999-0.525-1.061
081.223-2.811-0.787-2.437
091.067-0.572-0.758-2.811
10-0.281-2.2931.139-3.948
11-0.356-2.8111.113-1.628
12-2.437-2.6071.315-2.166
131.247-0.949-2.607-2.811
14-0.674-1.6281.108-1.33
15-2.166-0.2630.871-0.318
16-2.1661.239-1.061-2.437
17-0.195-0.701-0.1310.59
18-0.458-1.4391.067-1.498
19-0.572-1.0611.067-1.7
20-0.162-0.3370.794-1.498
210.882-0.1-0.597-2.054
220.782-0.318-0.071-1.861
230.444-0.4160.091-0.376
24-0.503-0.5250.3430.333
25-0.48-0.2630.648-0.356
Standard thresholds
P-value Threshold
0.001 1.66541
0.0005 2.87971
0.0001 5.46756