ZN565.H12INVITRO.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN565.H12INVITRO.0.P.D
Gene (human)	ZNF565 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	31
Consensus	RGChRCCATRYTGKRAGGAMGCYCARSYhvY
GC content	57.63%
Information content (bits; total / per base)	32.878 / 1.061
Data sources	ChIP-Seq
Aligned words	705

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (2)	0.942	0.942	0.93	0.93	0.926	0.926	16.026	16.026	407.409	407.409

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	Unclassified {2.3.3.0} (TFClass)
TFClass ID	TFClass: 2.3.3.0.146
HGNC	HGNC:26726
MGI
EntrezGene (human)	GeneID:147929 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN565_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8N9K5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN565.H12INVITRO.0.P.D.pcm
PWM	ZN565.H12INVITRO.0.P.D.pwm
PFM	ZN565.H12INVITRO.0.P.D.pfm
Alignment	ZN565.H12INVITRO.0.P.D.words.tsv
Threshold to P-value map	ZN565.H12INVITRO.0.P.D.thr
Motif in other formats
JASPAR format	ZN565.H12INVITRO.0.P.D_jaspar_format.txt
MEME format	ZN565.H12INVITRO.0.P.D_meme_format.meme
Transfac format	ZN565.H12INVITRO.0.P.D_transfac_format.txt
Homer format	ZN565.H12INVITRO.0.P.D_homer_format_0.001.txt ZN565.H12INVITRO.0.P.D_homer_format_0.0005.txt ZN565.H12INVITRO.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	389.0	31.0	253.0	32.0
02	87.0	23.0	569.0	26.0
03	42.0	596.0	18.0	49.0
04	106.0	338.0	38.0	223.0
05	206.0	10.0	445.0	44.0
06	14.0	677.0	8.0	6.0
07	4.0	698.0	1.0	2.0
08	676.0	14.0	6.0	9.0
09	10.0	14.0	8.0	673.0
10	94.0	39.0	537.0	35.0
11	33.0	289.0	31.0	352.0
12	18.0	49.0	8.0	630.0
13	65.0	15.0	593.0	32.0
14	25.0	24.0	116.0	540.0
15	133.0	47.0	501.0	24.0
16	641.0	7.0	46.0	11.0
17	7.0	6.0	687.0	5.0
18	14.0	9.0	679.0	3.0
19	603.0	35.0	54.0	13.0
20	530.0	89.0	24.0	62.0
21	113.0	26.0	557.0	9.0
22	14.0	652.0	11.0	28.0
23	28.0	428.0	19.0	230.0
24	22.0	644.0	21.0	18.0
25	619.0	28.0	20.0	38.0
26	534.0	35.0	116.0	20.0
27	67.0	71.0	511.0	56.0
28	44.0	481.0	82.0	98.0
29	301.0	209.0	67.0	128.0
30	247.0	91.0	320.0	47.0
31	41.0	495.0	78.0	91.0

PFM

	A	C	G	T
01	0.552	0.044	0.359	0.045
02	0.123	0.033	0.807	0.037
03	0.06	0.845	0.026	0.07
04	0.15	0.479	0.054	0.316
05	0.292	0.014	0.631	0.062
06	0.02	0.96	0.011	0.009
07	0.006	0.99	0.001	0.003
08	0.959	0.02	0.009	0.013
09	0.014	0.02	0.011	0.955
10	0.133	0.055	0.762	0.05
11	0.047	0.41	0.044	0.499
12	0.026	0.07	0.011	0.894
13	0.092	0.021	0.841	0.045
14	0.035	0.034	0.165	0.766
15	0.189	0.067	0.711	0.034
16	0.909	0.01	0.065	0.016
17	0.01	0.009	0.974	0.007
18	0.02	0.013	0.963	0.004
19	0.855	0.05	0.077	0.018
20	0.752	0.126	0.034	0.088
21	0.16	0.037	0.79	0.013
22	0.02	0.925	0.016	0.04
23	0.04	0.607	0.027	0.326
24	0.031	0.913	0.03	0.026
25	0.878	0.04	0.028	0.054
26	0.757	0.05	0.165	0.028
27	0.095	0.101	0.725	0.079
28	0.062	0.682	0.116	0.139
29	0.427	0.296	0.095	0.182
30	0.35	0.129	0.454	0.067
31	0.058	0.702	0.111	0.129

PWM

	A	C	G	T
01	0.787	-1.696	0.359	-1.665
02	-0.697	-1.977	1.166	-1.862
03	-1.405	1.212	-2.204	-1.256
04	-0.502	0.647	-1.501	0.233
05	0.155	-2.727	0.921	-1.36
06	-2.431	1.339	-2.915	-3.148
07	-3.451	1.369	-4.211	-3.889
08	1.337	-2.431	-3.148	-2.817
09	-2.727	-2.431	-2.915	1.333
10	-0.621	-1.476	1.108	-1.58
11	-1.636	0.491	-1.696	0.687
12	-2.204	-1.256	-2.915	1.267
13	-0.982	-2.369	1.207	-1.665
14	-1.899	-1.937	-0.414	1.113
15	-0.279	-1.297	1.039	-1.937
16	1.284	-3.025	-1.317	-2.644
17	-3.025	-3.148	1.354	-3.288
18	-2.431	-2.817	1.342	-3.647
19	1.223	-1.58	-1.162	-2.497
20	1.095	-0.674	-1.937	-1.028
21	-0.439	-1.862	1.144	-2.817
22	-2.431	1.301	-2.644	-1.792
23	-1.792	0.882	-2.154	0.264
24	-2.018	1.289	-2.061	-2.204
25	1.25	-1.792	-2.107	-1.501
26	1.102	-1.58	-0.414	-2.107
27	-0.952	-0.896	1.058	-1.127
28	-1.36	0.998	-0.755	-0.58
29	0.531	0.169	-0.952	-0.316
30	0.335	-0.652	0.592	-1.297
31	-1.428	1.027	-0.804	-0.652

Standard thresholds

P-value	Threshold
0.001	-5.50104
0.0005	-3.83174
0.0001	-0.23719