ZN563.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN563.H12RSNP.0.P.D
Gene (human)	ZNF563 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	21
Consensus	dKdnTCMYbdvhdKSMvChKh
GC content	58.77%
Information content (bits; total / per base)	11.208 / 0.534
Data sources	ChIP-Seq
Aligned words	952

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.794	0.81	0.731	0.743	0.759	0.781	3.061	3.156	288.658	294.0

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.12
HGNC	HGNC:30498
MGI
EntrezGene (human)	GeneID:147837 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN563_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8TA94 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN563.H12RSNP.0.P.D.pcm
PWM	ZN563.H12RSNP.0.P.D.pwm
PFM	ZN563.H12RSNP.0.P.D.pfm
Alignment	ZN563.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN563.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN563.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN563.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN563.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN563.H12RSNP.0.P.D_homer_format_0.001.txt ZN563.H12RSNP.0.P.D_homer_format_0.0005.txt ZN563.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	263.0	93.0	456.0	140.0
02	82.0	92.0	675.0	103.0
03	184.0	93.0	511.0	164.0
04	233.0	269.0	262.0	188.0
05	21.0	29.0	156.0	746.0
06	1.0	747.0	31.0	173.0
07	231.0	576.0	20.0	125.0
08	68.0	162.0	106.0	616.0
09	101.0	333.0	292.0	226.0
10	316.0	116.0	227.0	293.0
11	113.0	546.0	188.0	105.0
12	187.0	359.0	24.0	382.0
13	169.0	82.0	527.0	174.0
14	68.0	65.0	660.0	159.0
15	38.0	690.0	208.0	16.0
16	654.0	225.0	6.0	67.0
17	288.0	99.0	493.0	72.0
18	12.0	872.0	11.0	57.0
19	179.0	155.0	87.0	531.0
20	50.0	91.0	688.0	123.0
21	122.0	323.0	105.0	402.0

PFM

	A	C	G	T
01	0.276	0.098	0.479	0.147
02	0.086	0.097	0.709	0.108
03	0.193	0.098	0.537	0.172
04	0.245	0.283	0.275	0.197
05	0.022	0.03	0.164	0.784
06	0.001	0.785	0.033	0.182
07	0.243	0.605	0.021	0.131
08	0.071	0.17	0.111	0.647
09	0.106	0.35	0.307	0.237
10	0.332	0.122	0.238	0.308
11	0.119	0.574	0.197	0.11
12	0.196	0.377	0.025	0.401
13	0.178	0.086	0.554	0.183
14	0.071	0.068	0.693	0.167
15	0.04	0.725	0.218	0.017
16	0.687	0.236	0.006	0.07
17	0.303	0.104	0.518	0.076
18	0.013	0.916	0.012	0.06
19	0.188	0.163	0.091	0.558
20	0.053	0.096	0.723	0.129
21	0.128	0.339	0.11	0.422

PWM

	A	C	G	T
01	0.099	-0.929	0.647	-0.526
02	-1.052	-0.939	1.038	-0.828
03	-0.255	-0.929	0.76	-0.369
04	-0.021	0.122	0.095	-0.234
05	-2.356	-2.055	-0.419	1.138
06	-4.481	1.139	-1.992	-0.316
07	-0.03	0.88	-2.401	-0.638
08	-1.235	-0.381	-0.8	0.947
09	-0.847	0.334	0.203	-0.051
10	0.282	-0.711	-0.047	0.207
11	-0.737	0.826	-0.234	-0.809
12	-0.239	0.409	-2.232	0.47
13	-0.339	-1.052	0.791	-0.311
14	-1.235	-1.279	1.015	-0.4
15	-1.798	1.06	-0.134	-2.605
16	1.006	-0.056	-3.436	-1.249
17	0.189	-0.867	0.725	-1.179
18	-2.861	1.293	-2.937	-1.407
19	-0.283	-0.425	-0.994	0.799
20	-1.534	-0.95	1.057	-0.653
21	-0.661	0.303	-0.809	0.521

Standard thresholds

P-value	Threshold
0.001	4.46986
0.0005	5.31491
0.0001	7.08496