ZN563.H12INVITRO.1.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN563.H12INVITRO.1.P.D
Gene (human)	ZNF563 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	D

Motif length	15
Consensus	bvvWGRMAKCWbhdv
GC content	61.47%
Information content (bits; total / per base)	9.538 / 0.636
Data sources	ChIP-Seq
Aligned words	1002

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (5)	0.692	0.694	0.547	0.554	0.679	0.689	2.013	2.047	91.456	104.137

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF763-like {2.3.3.33} (TFClass)
TFClass ID	TFClass: 2.3.3.33.12
HGNC	HGNC:30498
MGI
EntrezGene (human)	GeneID:147837 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN563_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q8TA94 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN563.H12INVITRO.1.P.D.pcm
PWM	ZN563.H12INVITRO.1.P.D.pwm
PFM	ZN563.H12INVITRO.1.P.D.pfm
Alignment	ZN563.H12INVITRO.1.P.D.words.tsv
Threshold to P-value map	ZN563.H12INVITRO.1.P.D.thr
Motif in other formats
JASPAR format	ZN563.H12INVITRO.1.P.D_jaspar_format.txt
MEME format	ZN563.H12INVITRO.1.P.D_meme_format.meme
Transfac format	ZN563.H12INVITRO.1.P.D_transfac_format.txt
Homer format	ZN563.H12INVITRO.1.P.D_homer_format_0.001.txt ZN563.H12INVITRO.1.P.D_homer_format_0.0005.txt ZN563.H12INVITRO.1.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	107.0	445.0	337.0	113.0
02	419.0	283.0	182.0	118.0
03	160.0	552.0	243.0	47.0
04	492.0	95.0	27.0	388.0
05	65.0	20.0	884.0	33.0
06	128.0	97.0	716.0	61.0
07	160.0	766.0	58.0	18.0
08	922.0	6.0	4.0	70.0
09	98.0	13.0	791.0	100.0
10	19.0	885.0	77.0	21.0
11	588.0	64.0	87.0	263.0
12	80.0	299.0	529.0	94.0
13	324.0	425.0	98.0	155.0
14	306.0	119.0	412.0	165.0
15	144.0	464.0	261.0	133.0

PFM

	A	C	G	T
01	0.107	0.444	0.336	0.113
02	0.418	0.282	0.182	0.118
03	0.16	0.551	0.243	0.047
04	0.491	0.095	0.027	0.387
05	0.065	0.02	0.882	0.033
06	0.128	0.097	0.715	0.061
07	0.16	0.764	0.058	0.018
08	0.92	0.006	0.004	0.07
09	0.098	0.013	0.789	0.1
10	0.019	0.883	0.077	0.021
11	0.587	0.064	0.087	0.262
12	0.08	0.298	0.528	0.094
13	0.323	0.424	0.098	0.155
14	0.305	0.119	0.411	0.165
15	0.144	0.463	0.26	0.133

PWM

	A	C	G	T
01	-0.841	0.572	0.295	-0.788
02	0.512	0.121	-0.317	-0.745
03	-0.444	0.786	-0.03	-1.644
04	0.672	-0.958	-2.172	0.435
05	-1.33	-2.452	1.256	-1.983
06	-0.665	-0.938	1.046	-1.392
07	-0.444	1.113	-1.441	-2.548
08	1.298	-3.486	-3.785	-1.257
09	-0.928	-2.841	1.145	-0.908
10	-2.499	1.257	-1.164	-2.407
11	0.849	-1.345	-1.045	0.048
12	-1.127	0.176	0.744	-0.969
13	0.256	0.526	-0.928	-0.476
14	0.199	-0.737	0.495	-0.414
15	-0.549	0.613	0.041	-0.627

Standard thresholds

P-value	Threshold
0.001	4.78171
0.0005	5.56021
0.0001	7.16746