ZN562.H12RSNP.0.P.D motif - HOmo sapiens COmprehensive MOdel COllection

Motif	ZN562.H12RSNP.0.P.D
Gene (human)	ZNF562 (GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	D

Motif length	25
Consensus	WTTTCTCAGCAAGGCAATTTThYYY
GC content	35.25%
Information content (bits; total / per base)	37.427 / 1.497
Data sources	ChIP-Seq
Aligned words	292

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	1 (4)	0.933	0.975	0.937	0.977	0.937	0.986	16.624	18.363	136.458	155.194

TF superclass	Zinc-coordinating DNA-binding domains {2} (TFClass)
TF class	C2H2 zinc finger factors {2.3} (TFClass)
TF family	More than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamily	ZNF562-like {2.3.3.45} (TFClass)
TFClass ID	TFClass: 2.3.3.45.1
HGNC	HGNC:25950
MGI
EntrezGene (human)	GeneID:54811 (SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)	ZN562_HUMAN
UniProt ID (mouse)
UniProt AC (human)	Q6V9R5 (TFClass)
UniProt AC (mouse)
GRECO-DB-TF	yes

ChIP-Seq	1 human, 0 mouse
HT-SELEX	0
Methyl-HT-SELEX	0

PCM	ZN562.H12RSNP.0.P.D.pcm
PWM	ZN562.H12RSNP.0.P.D.pwm
PFM	ZN562.H12RSNP.0.P.D.pfm
Alignment	ZN562.H12RSNP.0.P.D.words.tsv
Threshold to P-value map	ZN562.H12RSNP.0.P.D.thr
Motif in other formats
JASPAR format	ZN562.H12RSNP.0.P.D_jaspar_format.txt
MEME format	ZN562.H12RSNP.0.P.D_meme_format.meme
Transfac format	ZN562.H12RSNP.0.P.D_transfac_format.txt
Homer format	ZN562.H12RSNP.0.P.D_homer_format_0.001.txt ZN562.H12RSNP.0.P.D_homer_format_0.0005.txt ZN562.H12RSNP.0.P.D_homer_format_0.0001.txt

PCM

	A	C	G	T
01	88.0	8.0	7.0	189.0
02	6.0	31.0	10.0	245.0
03	6.0	7.0	9.0	270.0
04	5.0	0.0	1.0	286.0
05	0.0	286.0	2.0	4.0
06	1.0	15.0	0.0	276.0
07	0.0	289.0	0.0	3.0
08	286.0	0.0	6.0	0.0
09	1.0	2.0	287.0	2.0
10	1.0	285.0	2.0	4.0
11	292.0	0.0	0.0	0.0
12	285.0	1.0	1.0	5.0
13	0.0	1.0	291.0	0.0
14	0.0	0.0	292.0	0.0
15	0.0	291.0	0.0	1.0
16	283.0	6.0	2.0	1.0
17	268.0	17.0	7.0	0.0
18	89.0	2.0	0.0	201.0
19	9.0	2.0	2.0	279.0
20	0.0	4.0	3.0	285.0
21	69.0	3.0	6.0	214.0
22	141.0	85.0	6.0	60.0
23	68.0	142.0	4.0	78.0
24	4.0	71.0	7.0	210.0
25	10.0	75.0	5.0	202.0

PFM

	A	C	G	T
01	0.301	0.027	0.024	0.647
02	0.021	0.106	0.034	0.839
03	0.021	0.024	0.031	0.925
04	0.017	0.0	0.003	0.979
05	0.0	0.979	0.007	0.014
06	0.003	0.051	0.0	0.945
07	0.0	0.99	0.0	0.01
08	0.979	0.0	0.021	0.0
09	0.003	0.007	0.983	0.007
10	0.003	0.976	0.007	0.014
11	1.0	0.0	0.0	0.0
12	0.976	0.003	0.003	0.017
13	0.0	0.003	0.997	0.0
14	0.0	0.0	1.0	0.0
15	0.0	0.997	0.0	0.003
16	0.969	0.021	0.007	0.003
17	0.918	0.058	0.024	0.0
18	0.305	0.007	0.0	0.688
19	0.031	0.007	0.007	0.955
20	0.0	0.014	0.01	0.976
21	0.236	0.01	0.021	0.733
22	0.483	0.291	0.021	0.205
23	0.233	0.486	0.014	0.267
24	0.014	0.243	0.024	0.719
25	0.034	0.257	0.017	0.692

PWM

	A	C	G	T
01	0.184	-2.067	-2.179	0.94
02	-2.306	-0.831	-1.874	1.197
03	-2.306	-2.179	-1.966	1.294
04	-2.45	-3.96	-3.426	1.351
05	-3.96	1.351	-3.08	-2.62
06	-3.426	-1.511	-3.96	1.316
07	-3.96	1.362	-3.96	-2.824
08	1.351	-3.96	-2.306	-3.96
09	-3.426	-3.08	1.355	-3.08
10	-3.426	1.348	-3.08	-2.62
11	1.372	-3.96	-3.96	-3.96
12	1.348	-3.426	-3.426	-2.45
13	-3.96	-3.426	1.368	-3.96
14	-3.96	-3.96	1.372	-3.96
15	-3.96	1.368	-3.96	-3.426
16	1.341	-2.306	-3.08	-3.426
17	1.287	-1.396	-2.179	-3.96
18	0.195	-3.08	-3.96	1.001
19	-1.966	-3.08	-3.08	1.327
20	-3.96	-2.62	-2.824	1.348
21	-0.055	-2.824	-2.306	1.063
22	0.649	0.149	-2.306	-0.192
23	-0.07	0.656	-2.62	0.065
24	-2.62	-0.027	-2.179	1.044
25	-1.874	0.027	-2.45	1.006

Standard thresholds

P-value	Threshold
0.001	-11.41069
0.0005	-9.37244
0.0001	-4.98199