MotifZN562.H12CORE.0.P.C
Gene (human)ZNF562
(GeneCards)
Gene synonyms (human)
Gene (mouse)
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length25
ConsensusWTTTCTCAGCAAGGCAATTTThYYY
GC content35.25%
Information content (bits; total / per base)37.427 / 1.497
Data sourcesChIP-Seq
Aligned words292

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (4) 0.933 0.975 0.937 0.977 0.937 0.986 16.624 18.363 136.458 155.194
TF superclassZinc-coordinating DNA-binding domains {2} (TFClass)
TF classC2H2 zinc finger factors {2.3} (TFClass)
TF familyMore than 3 adjacent zinc fingers {2.3.3} (TFClass)
TF subfamilyZNF562-like {2.3.3.45} (TFClass)
TFClass IDTFClass: 2.3.3.45.1
HGNCHGNC:25950
MGI
EntrezGene (human)GeneID:54811
(SSTAR profile)
EntrezGene (mouse)
UniProt ID (human)ZN562_HUMAN
UniProt ID (mouse)
UniProt AC (human)Q6V9R5
(TFClass)
UniProt AC (mouse)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 0 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
0188.08.07.0189.0
026.031.010.0245.0
036.07.09.0270.0
045.00.01.0286.0
050.0286.02.04.0
061.015.00.0276.0
070.0289.00.03.0
08286.00.06.00.0
091.02.0287.02.0
101.0285.02.04.0
11292.00.00.00.0
12285.01.01.05.0
130.01.0291.00.0
140.00.0292.00.0
150.0291.00.01.0
16283.06.02.01.0
17268.017.07.00.0
1889.02.00.0201.0
199.02.02.0279.0
200.04.03.0285.0
2169.03.06.0214.0
22141.085.06.060.0
2368.0142.04.078.0
244.071.07.0210.0
2510.075.05.0202.0
PFM
ACGT
010.3010.0270.0240.647
020.0210.1060.0340.839
030.0210.0240.0310.925
040.0170.00.0030.979
050.00.9790.0070.014
060.0030.0510.00.945
070.00.990.00.01
080.9790.00.0210.0
090.0030.0070.9830.007
100.0030.9760.0070.014
111.00.00.00.0
120.9760.0030.0030.017
130.00.0030.9970.0
140.00.01.00.0
150.00.9970.00.003
160.9690.0210.0070.003
170.9180.0580.0240.0
180.3050.0070.00.688
190.0310.0070.0070.955
200.00.0140.010.976
210.2360.010.0210.733
220.4830.2910.0210.205
230.2330.4860.0140.267
240.0140.2430.0240.719
250.0340.2570.0170.692
PWM
ACGT
010.184-2.067-2.1790.94
02-2.306-0.831-1.8741.197
03-2.306-2.179-1.9661.294
04-2.45-3.96-3.4261.351
05-3.961.351-3.08-2.62
06-3.426-1.511-3.961.316
07-3.961.362-3.96-2.824
081.351-3.96-2.306-3.96
09-3.426-3.081.355-3.08
10-3.4261.348-3.08-2.62
111.372-3.96-3.96-3.96
121.348-3.426-3.426-2.45
13-3.96-3.4261.368-3.96
14-3.96-3.961.372-3.96
15-3.961.368-3.96-3.426
161.341-2.306-3.08-3.426
171.287-1.396-2.179-3.96
180.195-3.08-3.961.001
19-1.966-3.08-3.081.327
20-3.96-2.62-2.8241.348
21-0.055-2.824-2.3061.063
220.6490.149-2.306-0.192
23-0.070.656-2.620.065
24-2.62-0.027-2.1791.044
25-1.8740.027-2.451.006
Standard thresholds
P-value Threshold
0.001 -11.41069
0.0005 -9.37244
0.0001 -4.98199